PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00384.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 120aa    MW: 13954 Da    PI: 9.5136
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00384.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3551.4e-1718105190
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              f++ +++ ++l++  l+lp +f+  +g+++++  ++tl d+ g + +  l+ +++sg++ ++kGW+eF++ang+k+g+++ ++l++
  Rsa1.0_00384.1_g00003.1  18 FLTLTLTTYNLRKYKLCLPGNFVWLNGMDNAR--KITLVDRYGFKRTTSLRPDNNSGKMRMGKGWREFCEANGVKVGESFKLELIK 101
                              677788999*****************999665..8********999999988********************************98 PP

                              SSEE CS
                       B3  87 rsef 90 
                              ++e+
  Rsa1.0_00384.1_g00003.1 102 EEEE 105
                              7443 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-1810117IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-1914103IPR015300DNA-binding pseudobarrel domain
SMARTSM010196.7E-1818120IPR003340B3 DNA binding domain
PROSITE profilePS5086312.16718119IPR003340B3 DNA binding domain
PfamPF023628.7E-1618105IPR003340B3 DNA binding domain
CDDcd100174.55E-1428101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
MYNRDSLRAS SSTSQERFLT LTLTTYNLRK YKLCLPGNFV WLNGMDNARK ITLVDRYGFK  60
RTTSLRPDNN SGKMRMGKGW REFCEANGVK VGESFKLELI KEEEEEEDTA IHLLKFCSKV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00384.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009146779.14e-57PREDICTED: B3 domain-containing protein REM7-like
TrEMBLA0A3P5Z1E57e-58A0A3P5Z1E5_BRACM; Uncharacterized protein
STRINGBra029892.1-P2e-56(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20422261
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.12e-22B3 family protein