PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00385.1_g00021.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 407aa    MW: 47270.1 Da    PI: 4.851
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00385.1_g00021.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.21.9e-102012792392
                              .HTT.......---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                       B3  23 aeeh.......ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                              a++h       + kk+++++++l +++g +W+++++++  +++  y l +GW++ v+ n+L+ + ++++   ++++++l
  Rsa1.0_00385.1_g00021.1 201 AKKHakkkgvdDDKKPKGVDVILLNRNGIKWNLNMRIWEMRSTfnYALCTGWNDLVRKNDLQINQTITLWSFHSRDGKL 279
                              4444555599988889*******************8877777779**********************987444455555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037541.4E-31136257IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.102.1E-16154287IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.84E-11157282IPR015300DNA-binding pseudobarrel domain
CDDcd100178.45E-10157283No hitNo description
PROSITE profilePS5086310.179221287IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MATTHDDDDV NKRSEGEKRC FDLFATLLFA YVNDETRARR EQEEQERNML MIRTITRAAA  60
NTFLLGKRKI DDLECENQEN TDSSRSLVES KRRRRVVVSD DDEPIRAEPI REIKPRVRER  120
KGPVKRKEPV GGEQVETPEW VYKLMETNNG DGKAKMIFEK ALTMTDLAPN QARLLMPFLQ  180
IADKNFLTEA ELEILKEHQE AKKHAKKKGV DDDKKPKGVD VILLNRNGIK WNLNMRIWEM  240
RSTFNYALCT GWNDLVRKND LQINQTITLW SFHSRDGKLY FAFDLPNQDH EALVPVTQAA  300
SSEDPFEISE DPFECEEASR RFYQFIRRRR TPRVCVQIIT NDSGYLEDGL DLNSTPPPEC  360
TDEMDLDLED VQETHVRSST SHESITETSL ASWRFVEEGE TAVLYET
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095KRRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00385.1_g00021.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479859.10.0PREDICTED: B3 domain-containing protein At2g31720-like
TrEMBLA0A078FR871e-173A0A078FR87_BRANA; BnaC04g42190D protein
STRINGBra021717.1-P1e-155(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM275656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.12e-08B3 family protein