PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00388.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 219aa    MW: 24336.5 Da    PI: 6.362
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00388.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.84.1e-084493253
                             HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHH CS
                      HLH  2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIks 53
                             +  h  +Er+RR+++   ++ Lr++lP       ++K   a+ +  A ++Ik+
  Rsa1.0_00388.1_g00004.1 44 KLLHRDIERQRRQEMAILYASLRSHLPLqY---LKGKRAVADHVNAAADFIKD 93
                             6679************************66...9999999**********996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.44E-1039112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.35E-64093No hitNo description
PROSITE profilePS5088810.8234294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-644112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-54493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MDPNKNPYSK GYQRQRPFGS AGEGGSSGCS DMPHDIDDNN KKKKLLHRDI ERQRRQEMAI  60
LYASLRSHLP LQYLKGKRAV ADHVNAAADF IKDTETRIKE LSARRDELSR ETCQRLDPDL  120
AGTGSELGKP EPASLIVQPC VNGFEVAVSS NSSGPDALPL SRVLEALQEL GLEVINSLTT  180
RVNERLMHTI QVEVNTFGCL DLAWLQQKLV EELIPSPGY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00388.1_g00004.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893091e-81AC189309.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034C07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450176.11e-159PREDICTED: transcription factor bHLH126-like
SwissprotQ9STJ61e-104BH126_ARATH; Transcription factor bHLH126
TrEMBLA0A078JFG01e-128A0A078JFG0_BRANA; BnaCnng43800D protein
TrEMBLA0A0D3DMU71e-128A0A0D3DMU7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FQY71e-128A0A3P6FQY7_BRAOL; Uncharacterized protein
STRINGBo8g050700.11e-129(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.11e-102bHLH family protein