PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00389.1_g00009.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 696aa    MW: 78353.6 Da    PI: 6.313
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00389.1_g00009.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-192779456
                             -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                              ++++++q++ Le++Fe++++p++++r++L ++l+L+ +qVk+WFqN+R++ k
  Rsa1.0_00389.1_g00009.1 27 YHRHSPQQIQKLEAYFEECPHPNESQRQKLCNELNLEIDQVKFWFQNKRTQSK 79
                             67899*********************************************988 PP
2START1081.5e-342184339206
                              HHHHHHHHC-TT-EEEE...EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEE CS
                    START   9 elvkkalaeepgWvkss...esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaet 81 
                              e++k+   ++++Wv ss   +  + +e++ kf++s         ++e +++++vv+ ++++l e +ld+  +W+  ++     a+t
  Rsa1.0_00389.1_g00009.1 218 EELKQLFTDDALWVMSSidgTYMIDQESYEKFSQSIKhlrnlsARVESSKDVTVVPIEATRLIEMFLDTD-KWKMLFPtivnNATT 302
                              6778888899*******999777888888888877778899*9***************************.99999988888**** PP

                              EEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECT CS
                    START  82 levissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksn 159
                              + ++ s        ++lq+++ +l  lsplvp R+f++vR+++q ++g w+i+dvS +  ++   s+s+ +   +pSg+li+ +sn
  Rsa1.0_00389.1_g00009.1 303 IRTLGSElstkencNVLQVISEQLHILSPLVPpREFMIVRCCQQISDGLWIIADVSHNIVNSDRVSPSCYK---RPSGCLIRALSN 385
                              ******************************************************99988777776777776...************ PP

                              CEEEEEEEE-EE--SSXX..HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
                    START 160 ghskvtwvehvdlkgrlp..hwllrslvksglaegaktwvatlqrqcek 206
                               +++vtw+ehv+++   p  h ++r l + +   ga++w  tl+r ce+
  Rsa1.0_00389.1_g00009.1 386 AKTQVTWIEHVEVDHT-PdtHRMYRELASGSSGYGARRWIVTLERMCER 433
                              ************9865.559***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.3E-18679IPR009057Homeodomain-like
SuperFamilySSF466892.05E-171081IPR009057Homeodomain-like
PROSITE profilePS5007116.3092181IPR001356Homeobox domain
SMARTSM003893.8E-152385IPR001356Homeobox domain
CDDcd000864.16E-162481No hitNo description
PfamPF000461.9E-162779IPR001356Homeobox domain
SuperFamilySSF559619.2E-24204434No hitNo description
CDDcd088754.05E-79207432No hitNo description
SMARTSM002349.3E-21210433IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-6214397IPR023393START-like domain
PfamPF018521.0E-28217433IPR002913START domain
PROSITE profilePS5084832.616218436IPR002913START domain
SuperFamilySSF559613.85E-7455656No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 696 aa     Download sequence    Send to blast
MDYDGDGSPD NEQYTSMNLM SKEKKIYHRH SPQQIQKLEA YFEECPHPNE SQRQKLCNEL  60
NLEIDQVKFW FQNKRTQSKA QDERNSNICL RAENERIRCE NAAMKEALKN VTCPPCGGPL  120
FGSDEREHNV HKLRSEKVLL KAECDNMKAA VNNYQQIMLD SLTSVQRQQT FETLTSYGMN  180
PYNPFNQPSS SESHTIQPQL LSQMDIPQLS ETAAIAVEEL KQLFTDDALW VMSSIDGTYM  240
IDQESYEKFS QSIKHLRNLS ARVESSKDVT VVPIEATRLI EMFLDTDKWK MLFPTIVNNA  300
TTIRTLGSEL STKENCNVLQ VISEQLHILS PLVPPREFMI VRCCQQISDG LWIIADVSHN  360
IVNSDRVSPS CYKRPSGCLI RALSNAKTQV TWIEHVEVDH TPDTHRMYRE LASGSSGYGA  420
RRWIVTLERM CERMALSSIP IMPPTDWSET IPTVEGRKSV MKIGERMLKI FNEMLIMSGK  480
VEFPQQSKCG VRISIRMNME AGQPPGLVAS AASCLSISRT PLQVFNCLRS NSIRHKWDAL  540
CHENVITETA HIATGSSETN YINLLQHTLA GDIGKNMEQE PDKKMMLLQE CYMDALGGMI  600
VYAPLDMALM SIAASGKVDP LKIPILPSGF TISSDNSGGS MASENGGTVL TLAFQILITD  660
KNSKIKNVTE NSVDSVSRLI SKTVQRIKSL FNCPPE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00389.1_g00009.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489833.10.0PREDICTED: homeobox-leucine zipper protein HDG8
SwissprotQ9M9P40.0HDG8_ARATH; Homeobox-leucine zipper protein HDG8
TrEMBLA0A078HX260.0A0A078HX26_BRANA; BnaC02g09070D protein
STRINGBo2g018400.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM127911530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03260.10.0homeodomain GLABROUS 8