PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00391.1_g00014.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bZIP

Protein Properties

Length: 249aa MW: 27001.1 Da PI: 6.6944

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00391.1_g00014.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	29.4	1.7e-09	76	122	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 k +r NReA r++R++Kka+ + Le++v L a N++L k+l+ Rsa1.0_00391.1_g00014.1 76 KSKKRPLGNREAVRKYREKKKAKAASLEDEVTRLRAVNSQLMKRLQG 122 66788999**********************************99974 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	1.2E-9	72	139	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	4.9E-14	73	140	No hit	No description
PROSITE profile	PS50217	8.875	74	121	IPR004827	Basic-leucine zipper domain
Pfam	PF07716	2.2E-14	75	129	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	7.7E-8	77	121	No hit	No description
CDD	cd14686	7.52E-12	78	130	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0071294	Biological Process	cellular response to zinc ion
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MDDGEVEFPL SSSSMDSFFD ELLRDSHACT HTHTCNPPGP ENTHTHTCLH VHTKILPAQT 60 QDKETTDDTS GSSGNKSKKR PLGNREAVRK YREKKKAKAA SLEDEVTRLR AVNSQLMKRL 120 QGQAALEAEV TRLKCLLVDI RGRIEGEIGA FPYQKPVVPN AHFSYTMQPC NMPCGVDNNS 180 LYCLQDGNSG EGSLMNEQGG LDGCEFDQLQ CFADQNLAGC SNGNGTFSAN TSGVATNKRK 240 GGTCAAKAV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269\|PubMed:20479230, ECO:0000269\|PubMed:26306426}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00391.1_g00014.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by zinc deficiency. {ECO:0000269\|PubMed:20479230}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018485797.1	1e-164	PREDICTED: basic leucine zipper 23-like isoform X2
Swissprot	Q8GTS2	1e-134	BZP23_ARATH; Basic leucine zipper 23
TrEMBL	A0A0D3BE21	1e-152	A0A0D3BE21_BRAOL; Uncharacterized protein
TrEMBL	A0A3P6B637	1e-152	A0A3P6B637_BRAOL; Uncharacterized protein
STRING	Bo3g091670.1	1e-152	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2036	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16770.1	1e-131	bZIP family protein

Publications ? help Back to Top
Azevedo H, et al. Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply. Genom Data, 2016. 7: p. 256-8 [PMID:26981422] Castro PH, et al. Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants. Sci Rep, 2017. 7(1): p. 3806 [PMID:28630437] Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE F-group bZIPs in barley-a role in Zn deficiency. Plant Cell Environ., 2017. 40(11): p. 2754-2770 [PMID:28763829] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]