PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00417.1_g00031.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

HB-other

Protein Properties

Length: 475aa MW: 53093.5 Da PI: 7.2437

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00417.1_g00031.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	14	69	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +kR t+ q+ +Le+++++++yps+e+++++A+++gLte+qV+ WF+ rR k+k+ Rsa1.0_00417.1_g00031.1 14 KKRKLKTPIQVMALENFYNEHKYPSEEMKAKMAEEIGLTEKQVSGWFCHRRLKDKR 69 8999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-19	4	69	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.584	10	70	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.84E-17	12	76	IPR009057	Homeodomain-like
SMART	SM00389	8.1E-19	12	74	IPR001356	Homeobox domain
Pfam	PF00046	1.1E-15	14	69	IPR001356	Homeobox domain
CDD	cd00086	3.05E-17	14	70	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MPADGDKHSA ENSKKRKLKT PIQVMALENF YNEHKYPSEE MKAKMAEEIG LTEKQVSGWF 60 CHRRLKDKRS VKEDGNNIGG SQDRSSVVLQ DRGSVLRQDS CGSTKQTDYW NAKPREVESQ 120 RLYDDDGEED STSSERRSSL HKNLVSSKDV ESSRYVARSE HPQVMRGYGF SKPSGYLKVK 180 GDNENVAITA VKRQLGRQYR EDGPPLGVVF DPLPPGAFEP QTNVIVQEPI YVGSQRRSHP 240 PYFTGTRKGF VPGPSYELAR KSKMHSSEDE DDDDDDDDMM GGMEPSLGDK QSLREPSFKS 300 PSLSYSNTVP DRKGLPQGVP LTNNKKSHIS SKGRAEGSRN NMTADFHNLS GTNQTHDYDK 360 SIFNGGRQTG YLTKSSNMLP LSSSRSSDSM ERDPSSGMVG KYHGEKMNHR EKLHSIGEPL 420 VTKGLKHGYP QQLYTPKPSN SETFERKDQI NRSGVELPSS FNGDETEESS SSSMD

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MPADGDKHSA ENSKKRKLKT PIQVMALENF YNEHKYPSEE MKAKMAEEIG LTEKQVSGWF  60
CHRRLKDKRS VKEDGNNIGG SQDRSSVVLQ DRGSVLRQDS CGSTKQTDYW NAKPREVESQ  120
RLYDDDGEED STSSERRSSL HKNLVSSKDV ESSRYVARSE HPQVMRGYGF SKPSGYLKVK  180
GDNENVAITA VKRQLGRQYR EDGPPLGVVF DPLPPGAFEP QTNVIVQEPI YVGSQRRSHP  240
PYFTGTRKGF VPGPSYELAR KSKMHSSEDE DDDDDDDDMM GGMEPSLGDK QSLREPSFKS  300
PSLSYSNTVP DRKGLPQGVP LTNNKKSHIS SKGRAEGSRN NMTADFHNLS GTNQTHDYDK  360
SIFNGGRQTG YLTKSSNMLP LSSSRSSDSM ERDPSSGMVG KYHGEKMNHR EKLHSIGEPL  420
VTKGLKHGYP QQLYTPKPSN SETFERKDQI NRSGVELPSS FNGDETEESS SSSMD

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00417.1_g00031.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC122543	0.0	AC122543.1 Genomic sequence for Brassica oleracea, clone B21H13, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018457400.1	0.0	PREDICTED: homeobox-DDT domain protein RLT1
TrEMBL	A0A0D3E089	0.0	A0A0D3E089_BRAOL; Uncharacterized protein
STRING	Bo9g006450.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12202	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G03250.1	0.0	HB-other family protein