PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00422.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 231aa    MW: 26373.9 Da    PI: 8.3715
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00422.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.3e-075197354
                             HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             r+h e ErrRR+riN  +++ r l+  +      K +Ka+ L k+v+ +++L
  Rsa1.0_00422.1_g00016.1 51 RKHRESERRRRERINYNLNKFRNLISCD-----SKTDKATLLAKVVQRVNEL 97
                             57************************98.....7***********9987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.4874897IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.05E-948101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.6E-1051107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-55197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-454103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550215.49E-5134210No hitNo description
Gene3DG3DSA:3.30.70.2601.4E-5134210No hitNo description
CDDcd048731.78E-4135201No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MQPEISDQIL YSFLTGGSCA SSTTTTRRSS FFPCAMEDTS SQDKALATNL RKHRESERRR  60
RERINYNLNK FRNLISCDSK TDKATLLAKV VQRVNELKQQ TLDISKETVP SETDEISVLN  120
FEDCSNEDGR IIFKVSFCCE DRPDLMKDLV ETLRSLRMET VYAYMTTIGG RTRNDLVVVG  180
NKEQHSVESV TLLQNALKSL LERSNQSVMM GHGGGEERSK RRRPVDHIIR V
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15162KHRESERRRRER
25661ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00422.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458584.11e-169PREDICTED: putative transcription factor bHLH107
SwissprotQ9LET01e-102BH107_ARATH; Putative transcription factor bHLH107
TrEMBLA0A0D3BXG01e-133A0A0D3BXG0_BRAOL; Uncharacterized protein
TrEMBLA0A3P6CQJ61e-133A0A3P6CQJ6_BRAOL; Uncharacterized protein
STRINGBo4g112750.11e-134(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36422762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.12e-97bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]