PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00425.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 403aa    MW: 45381.7 Da    PI: 8.2073
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00425.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.86.5e-12263288126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              y   +C+++ +tG+C yGd+CkF H+
  Rsa1.0_00425.1_g00003.1 263 YQPDICKDYKETGYCGYGDSCKFLHD 288
                              66789********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.96E-9261294IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-8262289IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.009262290IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-13263293IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9263288IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.30.40.102.5E-13322379IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF139206.8E-9337379No hitNo description
SuperFamilySSF578503.53E-13337380No hitNo description
SMARTSM001845.0E-5338375IPR001841Zinc finger, RING-type
PROSITE profilePS5008910.66338376IPR001841Zinc finger, RING-type
CDDcd001624.45E-8338379No hitNo description
PROSITE patternPS005180353362IPR017907Zinc finger, RING-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MCLQNVSDQK KCEHRRGSSS RRTSPARFRK AYMPVNGIGR GGAKFELVVC ITMSDTVQEP  60
KTSHQQQDSQ PAAAVAAVTQ ESQSQQVCTF FKKPSKAKNI RKRPAADADE EDDDDSKSET  120
SILNKLKKVA KPDNNKLFFS SGPSKISATT APPEKAVVFH YDSSKEIQVQ NDSRATATLE  180
TETDFNQDAR AIRERVLKRA DEALKGNKKN KASDEKLYTG IHGYTDHKAG FRREQTISSE  240
KAGGSHGPLR ASAHIRVSAR FDYQPDICKD YKETGYCGYG DSCKFLHDRG DYKPGWQIEK  300
EWEEAEKVRK RNKAMGVEDE DDDEADSEED EDALPFACFI CRESFVDPVV TKCKHYFCEH  360
CALKHHTKNK KCFVCNQPTM GIFNAAHEIK KRMAEERSKA QGL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5z56_M6e-698640213326RING finger protein 113A
5z58_M6e-698640213326RING finger protein 113A
6ff4_t6e-698640213326RING finger protein 113A
6ff7_t6e-698640213326RING finger protein 113A
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00425.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018440868.10.0PREDICTED: zinc finger CCCH domain-containing protein 1-like isoform X1
SwissprotQ8GX840.0C3H1_ARATH; Zinc finger CCCH domain-containing protein 1
TrEMBLA0A397XHL20.0A0A397XHL2_BRACM; Uncharacterized protein
STRINGXP_010474729.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM110992634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01350.10.0C3H family protein