PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00427.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family SRS
Protein Properties Length: 237aa    MW: 26691.5 Da    PI: 9.3563
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00427.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702196.39.6e-6171485154
                   DUF702   5 tasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstk 90 
                              + +C+dCGnqakk+C+++RCRtCCks++f+C+th+kstWvpa++r+ + +q +++++ ++++ ++ ++kr re+  + +s+ ss+ 
  Rsa1.0_00427.1_g00016.1   7 GRRCEDCGNQAKKECVYMRCRTCCKSKAFHCQTHIKSTWVPAYRRSRK-HQSQTQTQPQQQQLSTTNPKRLREQ--HPTSSPSSSG 89 
                              569***************************************987665.5555556666677788888888876..4444444444 PP

                   DUF702  91 lssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                              +        ++t  +P e+ss a frcv+vss+ddg+e++aYqt+v+igGhvfkGiL+dqGle+
  Rsa1.0_00427.1_g00016.1  90 VR-----IGTSTGYFPVELSSVADFRCVKVSSIDDGKEQYAYQTTVNIGGHVFKGILHDQGLEK 148
                              44.....4456688***********************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.2E-577147IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016233.0E-281051IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.4E-2999146IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MMMMLTGRRC EDCGNQAKKE CVYMRCRTCC KSKAFHCQTH IKSTWVPAYR RSRKHQSQTQ  60
TQPQQQQLST TNPKRLREQH PTSSPSSSGV RIGTSTGYFP VELSSVADFR CVKVSSIDDG  120
KEQYAYQTTV NIGGHVFKGI LHDQGLEKVV LDHQPAHHDQ ALLIPSSSSS CPLMITSPFT  180
DFMSGTHTKS FSELDAGRRR NFVVIRLLLW EGRNVKKGGE LMDVDLVMLM ESSRMGS
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00427.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0068416e-59AC006841.7 Arabidopsis thaliana chromosome 2 clone F3K23 map mi148, complete sequence.
GenBankCP0026856e-59CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013717020.11e-119protein SHI RELATED SEQUENCE 3-like
SwissprotQ9SJT81e-85SRS3_ARATH; Protein SHI RELATED SEQUENCE 3
TrEMBLA0A078FRX71e-118A0A078FRX7_BRANA; BnaA04g12150D protein
TrEMBLA0A397ZT161e-118A0A397ZT16_BRACM; Uncharacterized protein
STRINGBo4g145920.11e-117(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91882638
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21400.12e-82SHI-related sequence3