PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00428.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HD-ZIP
Protein Properties Length: 154aa    MW: 17820 Da    PI: 7.9394
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00428.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.44.9e-18762156
                             TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                             r k+ ++t+eq+++Le++F  n+++  + + +L++ lgL++rqV vWFqN+Ra+ k
  Rsa1.0_00428.1_g00011.1  7 RNKKKRLTQEQVRQLEKCFTLNNKLEPDLKLQLSNTLGLPQRQVAVWFQNKRARSK 62
                             567889************************************************99 PP
2HD-ZIP_I/II104.58.5e-348100193
              HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 
                              +kk+rl++eqv++LE++F+ ++kLep+ K +l+++Lgl +rqvavWFqn+RAR kt+ lE +y  L+++++a+ +++++Le++v+ 
  Rsa1.0_00428.1_g00011.1   8 NKKKRLTQEQVRQLEKCFTLNNKLEPDLKLQLSNTLGLPQRQVAVWFQNKRARSKTQSLELQYCNLQSKLEAVLSDKAKLENQVQF 93 
                              59************************************************************************************ PP

              HD-ZIP_I/II  87 Lreelke 93 
                              L++elk+
  Rsa1.0_00428.1_g00011.1  94 LQDELKR 100
                              ****986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.4E-17367IPR009057Homeodomain-like
PROSITE profilePS5007116.86464IPR001356Homeobox domain
SuperFamilySSF466891.63E-17465IPR009057Homeodomain-like
SMARTSM003891.4E-16668IPR001356Homeobox domain
CDDcd000869.09E-14765No hitNo description
PfamPF000461.6E-15762IPR001356Homeobox domain
PROSITE patternPS0002703962IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009646Biological Processresponse to absence of light
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MENPQSRNKK KRLTQEQVRQ LEKCFTLNNK LEPDLKLQLS NTLGLPQRQV AVWFQNKRAR  60
SKTQSLELQY CNLQSKLEAV LSDKAKLENQ VQFLQDELKR SRNQLALFTH QDSPVDNSNL  120
GSCEEGHDDQ VMVFDELYDC FVTNGRGSSS TSWV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00428.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0076441e-142AB007644.1 Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone: K19P17.
GenBankAK2292111e-142AK229211.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-49-M21.
GenBankBT0159271e-142BT015927.1 Arabidopsis thaliana At5g53980 mRNA, complete cds.
GenBankBT0219201e-142BT021920.1 Arabidopsis thaliana At5g53980 gene, complete cds.
GenBankCP0026881e-142CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469586.11e-108PREDICTED: homeobox-leucine zipper protein ATHB-52
SwissprotQ9FN298e-93ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A078JVD71e-100A0A078JVD7_BRANA; BnaCnng64030D protein
STRINGBostr.26833s0878.1.p2e-94(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM121072632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.13e-95homeobox protein 52