PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00433.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 295aa    MW: 33697 Da    PI: 6.806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00433.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.12.1e-15106157155
                              CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +r++h ++Er+RR+++N+ ++ Lr+l+P++   ++++ + a+i+  A++Y+k+L+
  Rsa1.0_00433.1_g00008.1 106 QRMTHIAVERNRRKQMNEYLAVLRSLMPSS---YAQRGDQASIVGGAINYVKELE 157
                              79****************************...*******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.67E-13104161No hitNo description
Gene3DG3DSA:4.10.280.103.5E-14104159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.272105156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-17105169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-12106157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.5E-10111162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MPLGAVVYPQ DTFEYLSICK DFMFHDLSYQ EKVVAQDTKN NVDTLGQEQS FVEVARDYHH  60
KYPLIRLLDE KLDLPATDME NHSAIQPRKK RRRTRSKKNK EEIESQRMTH IAVERNRRKQ  120
MNEYLAVLRS LMPSSYAQRG DQASIVGGAI NYVKELEHIL QSMEPRRTTT TTHEADTSTN  180
SLMSPFSEFF TYPQYSTKSS SAATENSSSP TEIEVTVAEG HANIKIMTKR KPRQLLQLVD  240
SIQSLGLTLL HLNVTTLDNS ILYSISVKVE EGSQLNTVDD IATALNQIVR RIQEE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1106117RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00433.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489453.10.0PREDICTED: transcription factor bHLH94
SwissprotQ9SK911e-149BH094_ARATH; Transcription factor bHLH94
TrEMBLA0A0D3CCF41e-178A0A0D3CCF4_BRAOL; Uncharacterized protein
TrEMBLA0A3N6RIL21e-178A0A3N6RIL2_BRACR; Uncharacterized protein
TrEMBLA0A3P6EFZ51e-178A0A3P6EFZ5_BRAOL; Uncharacterized protein
STRINGBo5g038570.11e-179(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM111627102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22490.11e-138bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]