PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00438.1_g00003.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 164aa MW: 18385.7 Da PI: 8.0185

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00438.1_g00003.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00022	19	41	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C++ F + +L +Hi+t H Rsa1.0_00438.1_g00003.1 19 ECSLCKRIFLTLQDLISHINTfH 41 6*******************999 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	20	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 164 aa Download sequence Send to blast
MNGGFGMKED LTRVSNHQEC SLCKRIFLTL QDLISHINTF HSNHHLSTFS SSAAAAPTAF 60 HQYPNLNRSP NPAFPARNCF DSKNYRIDHA DEQGRFLKGS PARNTNVLFG QQEKPKLMNL 120 FPTTPSEGLH TLPLLCQLET QRPQDTATEK GGDISSYIDL TLRL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00438.1_g00003.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC189246	1e-133	AC189246.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB017P15, complete sequence.
GenBank	AC232437	1e-133	AC232437.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB002B23, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490265.1	1e-120	PREDICTED: uncharacterized protein LOC108860923
TrEMBL	A0A078J4Z9	3e-75	A0A078J4Z9_BRANA; BnaC08g50080D protein
TrEMBL	A0A3P6GSX7	3e-75	A0A3P6GSX7_BRAOL; Uncharacterized protein
STRING	Bo8g115550.1	6e-76	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM13551	13	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G04445.1	6e-36	C2H2-like zinc finger protein