PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00439.1_g00017.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

SRS

Protein Properties

Length: 221aa MW: 24622.3 Da PI: 7.8624

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00439.1_g00017.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	181.9	2.6e-56	67	208	2	154
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 rs t+sCqdCGnqakk+C+h+RCRtCCks+g+dC thv+stW+paakrrerqqq ++++++++ + + ++ Rsa1.0_00439.1_g00017.1 67 RSVTISCQDCGNQAKKGCTHMRCRTCCKSQGLDCPTHVRSTWIPAAKRRERQQQIETPTANRNGRG-CGVGNIPK----------R 141 67899***********************************************999877665533.22222222..........2 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 s l+ + + e+ ++++Peevss+a+frcvr+s+ ddge ++aYqt+v i+GhvfkGiLy +G+e+ Rsa1.0_00439.1_g00017.1 142 SWDLPATLDSPEMGKTTFPEEVSSDALFRCVRMSGTDDGEGQFAYQTTVGIAGHVFKGILYSEGPES 208 33344444445677788*********************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.2E-57	70	207	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.1E-27	72	114	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	7.2E-27	159	206	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 221 aa Download sequence Send to blast
MAGVGSSRNN EEDNQHKTNW LWYRNTVSSN TSHSNQHPIC QQQIWQQQSL DLYPGQINVC 60 DVNTSSRSVT ISCQDCGNQA KKGCTHMRCR TCCKSQGLDC PTHVRSTWIP AAKRRERQQQ 120 IETPTANRNG RGCGVGNIPK RSWDLPATLD SPEMGKTTFP EEVSSDALFR CVRMSGTDDG 180 EGQFAYQTTV GIAGHVFKGI LYSEGPESMP GTQFYENPLR S

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00439.1_g00017.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018435118.1	1e-167	PREDICTED: protein SHI RELATED SEQUENCE 4
Swissprot	Q9SI19	1e-110	SRS4_ARATH; Protein SHI RELATED SEQUENCE 4
TrEMBL	A0A397YHC1	1e-142	A0A397YHC1_BRACM; Uncharacterized protein
STRING	Bra039917.1-P	1e-138	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15117	15	19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G18120.1	1e-108	SHI-related sequence 4