PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00442.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

LBD

Protein Properties

Length: 204aa MW: 23275.9 Da PI: 10.334

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00442.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	110.4	1.3e-34	20	111	1	92
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 aCa+Ck++r+kC+++C+l+pyfpa+++k+f++vhk+FG+snv+k+++ ++ee+r+++ +sl++eA +r++dPv G++g +++l+++ Rsa1.0_00442.1_g00004.1 20 ACASCKHQRKKCNNECILSPYFPARKNKEFQAVHKVFGVSNVQKMVRIVREEDRTKLSESLTWEALWRQKDPVLGSYGEYRRLSEE 105 7************************************************************************************* PP DUF260 87 leqlka 92 l+ k+ Rsa1.0_00442.1_g00004.1 106 LKLYKS 111 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	23.518	19	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-32	20	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
MMQRNSNNSN ISSNSPPHQA CASCKHQRKK CNNECILSPY FPARKNKEFQ AVHKVFGVSN 60 VQKMVRIVRE EDRTKLSESL TWEALWRQKD PVLGSYGEYR RLSEELKLYK SVVHNQPLVT 120 WNSSNNQQRV FNNSNNNKNG LAVNSSDSGG FSVVNNNGVG VNREIINGGY TSRNLQGGWG 180 NLKQDQRQQY YAVINGFKQH HPPH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-17	21	106	12	104	LOB family transfactor Ramosa2.1
5ly0_B	2e-17	21	106	12	104	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00442.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018490366.1	1e-151	PREDICTED: LOB domain-containing protein 2-like
Swissprot	Q9LNB9	1e-106	LBD2_ARATH; LOB domain-containing protein 2
TrEMBL	V4MVQ1	1e-112	V4MVQ1_EUTSA; Uncharacterized protein
STRING	XP_006417938.1	1e-113	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10539	26	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	1e-87	LOB domain-containing protein 2