PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00451.1_g00036.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 444aa    MW: 48733.8 Da    PI: 8.7579
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00451.1_g00036.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.2e-057799123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             + C+ C+k F r  nL+ H r H
  Rsa1.0_00451.1_g00036.1 77 FICEVCNKGFQREQNLQLHRRGH 99
                             89*******************88 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.608.4E-67699IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527799IPR015880Zinc finger, C2H2-like
PfamPF121712.7E-57799IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997799IPR007087Zinc finger, C2H2
SuperFamilySSF576671.58E-77799No hitNo description
PROSITE patternPS0002807999IPR007087Zinc finger, C2H2
SMARTSM0035564118148IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.58E-7148173No hitNo description
SMARTSM0035599153173IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MSSSHNNTIS SSSSLSFPLL ATGANNFNRE ETAMAMNQQR NSVSPPPRRQ RNKPGNPSPD  60
AEVIALCPEE IMATYRFICE VCNKGFQREQ NLQLHRRGHG LSYTLKQNSD EEVRRKVYVC  120
PEPTCVYHDP SRALGDLTGI KKHYSRKHGE KKFKCDKCPR CYAVESDYKA HSKICGTKEY  180
RCVCGTKFSR KDSYDTHRTF CALLEEPARN PTVSFTEMAA AAGGSGGRHG FYGGASPALT  240
HNHFGNSSNT GFAPLAAGYN LNRSSPQTYE DFGPQPTNPN HGPTNFSMRY PSNQEMLAQN  300
DQNLMNLHGL MNSNNNNNLF NPRYFQDNTN NLSDQTGVPS LFNHADNNVP SALPRGSSVA  360
ANNFGGSGNG NFQGQMNSLA ATSDHQARPG SSIFDHRFGN NLSMGGSGRQ TLDFLGVNSR  420
GGRNGPPLDV NMKFPDPNNP FGNV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C1e-22149214369Zinc finger protein JACKDAW
5b3h_F1e-22149214369Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00451.1_g00036.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894990.0AC189499.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086M23, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488197.10.0PREDICTED: LOW QUALITY PROTEIN: protein indeterminate-domain 6, chloroplastic
SwissprotQ8RWX70.0IDD6_ARATH; Protein indeterminate-domain 6, chloroplastic
TrEMBLA0A078I3250.0A0A078I325_BRANA; BnaA06g09400D protein
TrEMBLA0A3P5YDD10.0A0A3P5YDD1_BRACM; Uncharacterized protein
STRINGBra026204.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36781759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14580.21e-164C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Bustillo-Avendaño E, et al.
    Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis.
    Plant Physiol., 2018. 176(2): p. 1709-1727
    [PMID:29233938]