PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00469.1_g00010.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 326aa MW: 35999 Da PI: 6.8901

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00469.1_g00010.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.5e-13	274	319	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR +i +++ +L+el+P+ +k + a++L +Av+YIk+Lq Rsa1.0_00469.1_g00010.1 274 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYIKDLQ 319 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.262	268	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-15	271	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.44E-13	272	321	No hit	No description
Gene3D	G3DSA:4.10.280.10	9.6E-14	273	322	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.9E-13	274	324	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.7E-10	274	319	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDSNTRNHLY DPNHTSSSGS GLLRFRSAPS SVLAAFVDDK TGFGSSGRFL NDLNGFDDKS 60 PVSAALPPPP PPPQQPEPSS FLGLPPHYPR QSKGMMMTTI GLDQYLDLNN HHLKPVGSNL 120 LRQSSSPAGT FTNLSGQNGY GYVGEEEEEE EESPSHSNGL RRHSSLSSRP PPSSLGMLSQ 180 IPEIDSESVQ YSHWNDPSSF IHNLSSSSLK TETEDDGKLF HGSHLMSHHL SLPKSSSSSS 240 TASDMVSVDK YLQLQDSVPC KIRAKRGCAT HPRSIAERVR RTKISERMRK LQELVPNMDK 300 QTNTADMLDL AVDYIKDLQR QYKVCY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00469.1_g00010.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK228981	1e-103	AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05.
GenBank	BT015339	1e-103	BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds.
GenBank	BT015712	1e-103	BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018434876.1	0.0	PREDICTED: transcription factor bHLH130-like
Swissprot	Q66GR3	1e-152	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A1J3EZD0	1e-153	A0A1J3EZD0_NOCCA; Uncharacterized protein
TrEMBL	A0A1J3K3R5	1e-153	A0A1J3K3R5_NOCCA; Uncharacterized protein
STRING	Bostr.25993s0551.1.p	1e-154	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6293	27	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	1e-103	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]