PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00484.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family WOX
Protein Properties Length: 346aa    MW: 39498.1 Da    PI: 8.2949
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00484.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox69.44.5e-2273132357
                              --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                 Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                              +R+++t++ql++Leel+++ +r+psa+++++++++l    +++ ++V++WFqN++a+e++
  Rsa1.0_00484.1_g00005.1  73 SRWNPTPDQLKALEELYQQgTRTPSADHIQQITAQLrrygKIEGKNVFYWFQNHKARERQ 132
                              7*****************99**************************************97 PP
2Wus_type_Homeobox115.33e-3772134365
        Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                              ++RW+Ptp+Q+k Leely++G+rtP++++iq+ita+L++yGkie+kNVfyWFQN+kaRerqk+
  Rsa1.0_00484.1_g00005.1  72 SSRWNPTPDQLKALEELYQQGTRTPSADHIQQITAQLRRYGKIEGKNVFYWFQNHKARERQKR 134
                              79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003898.3E-670137IPR001356Homeobox domain
SuperFamilySSF466891.18E-1272139IPR009057Homeodomain-like
PfamPF000468.8E-2073132IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-973132IPR009057Homeodomain-like
CDDcd000862.07E-674134No hitNo description
PROSITE profilePS5007110.98178133IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MWMMGYNEGG ADSFDGGRKL RPLIPRLSSC PTAANSDHRF NMAVMTTMTA EQNKRELMML  60
NSEPQHPPLM VSSRWNPTPD QLKALEELYQ QGTRTPSADH IQQITAQLRR YGKIEGKNVF  120
YWFQNHKARE RQKRRRQMEN VTTTSLVSNH GFDKKYPPSY KVEQTKNWIC SVGCDIQPKK  180
PHDPNHQEEP ISIAMVATKR NGRHVGDERQ NFPGRNAMSQ MMQLAPGHYP SSQQQQQQQH  240
HQLILNSTTV SSNFSTSNST VSAAKDTVTV SPLFLRTGAA TNTGTCDDNK DEERREDCLN  300
GEVDHQEQTL ELFPLRKEGF CNNGRDDGKE KESGPHCFYE FLPLKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00484.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY2513941e-131AY251394.1 Arabidopsis thaliana WOX1 protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489180.10.0PREDICTED: WUSCHEL-related homeobox 1-like isoform X1
SwissprotQ6X7K01e-179WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A0D3CJ430.0A0A0D3CJ43_BRAOL; Uncharacterized protein
STRINGBo5g121370.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73972741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.11e-174WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]