PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00493.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 539aa    MW: 60980 Da    PI: 4.8669
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00493.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3376.83.5e-11514736439257
                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXX CS
                     EIN3  39 ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWWkekvefdrngpaaisky.qaknlilsges 123
                              ++ e++rrkkm+r+QD++LkYM+k+mevc+a+GfvYgi+pekgkp +g+sdsLr+WWke+v+fd+n+p+a+s+y   + +++  ++
  Rsa1.0_00493.1_g00014.1 147 HRAEASRRKKMARSQDSVLKYMMKIMEVCKAKGFVYGIVPEKGKPITGSSDSLRRWWKENVQFDQNAPNAVSDYlTLAAAAA--AE 230
                              789***********************************************************************54333333..34 PP

                              XX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHHHT--TT--.-----GGG--HHHHHHH CS
                     EIN3 124 slqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwgelglskdqgtppykkphdlkkawkvsv 209
                                + e+ss  h+l+elqDTtlgSLLsalmqhc ppqrrfplekg++pPWWPtG+elwwge+g++++qg ppy+kphdl+k wkvsv
  Rsa1.0_00493.1_g00014.1 231 LIEKEPSSLLHMLQELQDTTLGSLLSALMQHCAPPQRRFPLEKGIAPPWWPTGRELWWGEQGAAHEQGVPPYRKPHDLRKSWKVSV 316
                              44779********************************************************************************* PP

                              HHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S CS
                     EIN3 210 Ltavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekec 257
                              L+avikhmsp++ ++r+l+rqsk+lqdkm+a+e++++++vlnqee+++
  Rsa1.0_00493.1_g00014.1 317 LAAVIKHMSPNLGRVRRLARQSKCLQDKMMARETDTWSRVLNQEEALL 364
                              *********************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.9E-113138361No hitNo description
Gene3DG3DSA:1.10.3180.108.4E-68237364IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.22E-59240364IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MVEVEELESL SPVEDADEGE EDEEISYDDL KRRMWKDQNL MEKLKQQKRD NTDANQNPDD  60
QLPSRYGVTE TDKSSSAFSR VDLLVHNGVK QYLHELVLDS ASLLAILLSS DLCRWFVGFS  120
SCFRLGIGGG DSASAAGTDF SSMVPWHRAE ASRRKKMARS QDSVLKYMMK IMEVCKAKGF  180
VYGIVPEKGK PITGSSDSLR RWWKENVQFD QNAPNAVSDY LTLAAAAAAE LIEKEPSSLL  240
HMLQELQDTT LGSLLSALMQ HCAPPQRRFP LEKGIAPPWW PTGRELWWGE QGAAHEQGVP  300
PYRKPHDLRK SWKVSVLAAV IKHMSPNLGR VRRLARQSKC LQDKMMARET DTWSRVLNQE  360
EALLNIKDLV ISEDQEASGS KTKRKGEFME PSKSVYTCQN SSCPQSDASF GFMDKNSRTG  420
HEIQCLYGSS SQSTGDTRSV LETAPSIGTN TTSEDDYSAS SSTMGKRDDD DHSNWLDYLW  480
FERMQHEFNC SRRFEDDDGT AVDLNQLLES DQSSHNVNQN NFSVWDMGCE DKDIYMFDY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A5e-592413634126Protein ETHYLENE INSENSITIVE 3
4zds_B5e-592413634126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00493.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2400890.0AC240089.1 Brassica oleracea clone BOT01-64A15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469634.10.0PREDICTED: putative ETHYLENE INSENSITIVE 3-like 4 protein
SwissprotQ9LX160.0EIL4_ARATH; Putative ETHYLENE INSENSITIVE 3-like 4 protein
TrEMBLA0A078HTL30.0A0A078HTL3_BRANA; BnaC02g00520D protein
TrEMBLA0A0D3AID80.0A0A0D3AID8_BRAOL; Uncharacterized protein
STRINGBo2g009710.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58792747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10120.10.0EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Jeong HJ,Choi JY,Shin HY,Bae JM,Shin JS
    Seed-specific expression of seven Arabidopsis promoters.
    Gene, 2014. 553(1): p. 17-23
    [PMID:25261846]