PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00496.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 287aa MW: 33012.4 Da PI: 5.2985

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00496.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.5	3.1e-05	81	130	8	54
HHHHHHHHHHHHHHHHHC..TSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLre..llPk.askapskKlsKaeiLekAveYIksL 54 Er RR + N++f+ Lr+ +P+ +++ + + a+i+ +A++YIk+L Rsa1.0_00496.1_g00004.1 81 TERERRVHFNDRFSILRTsfQIPQrLFSFFAFDSDRASIVGEAIDYIKEL 130 59*************955699988888888889999********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.445	73	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.28E-7	75	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-6	81	143	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.45E-6	82	135	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MEVEKGRNIY EEMPCFDPNT PASVTAESSC FSQVQPPQIL VAGSTSNSNC SLDVEEFHLS 60 PQDCPQASPT PLHQFHINPP TERERRVHFN DRFSILRTSF QIPQRLFSFF AFDSDRASIV 120 GEAIDYIKEL LRTIEEFKML LEKKKLEEFR SMKKAKTDGE EEEEDNVSYR QQSELDQSCF 180 NKKSLRCSWL KRKSKVTEVD VRIIDDEVTI KVVQKKKINC LLFTSKVLDQ LKLDLHHVAG 240 RQIGEHYSFL FNAKICEESC VYASGIADTA MEAVEKQYME AVPTNGY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00496.1_g00004.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF251695	1e-105	AF251695.1 Arabidopsis thaliana putative transcription factor BHLH10 mRNA, complete cds.
GenBank	AK228592	1e-105	AK228592.1 Arabidopsis thaliana mRNA for putative transcription factor BHLH10, complete cds, clone: RAFL15-38-K03.
GenBank	BT005711	1e-105	BT005711.1 Arabidopsis thaliana clone RAFL15-38-K03 (R50165) putative bHLH protein (At2g31220) mRNA, complete cds.
GenBank	BT008608	1e-105	BT008608.1 Arabidopsis thaliana clone U50165 putative bHLH protein (At2g31220) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018478258.1	0.0	PREDICTED: transcription factor bHLH10-like
Swissprot	Q84TK1	1e-101	BH010_ARATH; Transcription factor bHLH10
TrEMBL	A0A078FSY8	1e-109	A0A078FSY8_BRANA; BnaC04g42050D protein
TrEMBL	A0A0D3C3D5	1e-109	A0A0D3C3D5_BRAOL; Uncharacterized protein
STRING	Bo4g176070.1	1e-110	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	2e-89	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]