PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00496.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 443aa    MW: 50228.8 Da    PI: 4.9365
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00496.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.48.2e-11231274654
                              HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                 Er RR ++N+++e L+ l+P++      K + a+iL+  ++YI++L
  Rsa1.0_00496.1_g00005.1 231 FTTERERRCHLNERYEALKLLIPNP-----SKGDRASILQDGIDYINEL 274
                              578*********************9.....79**************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.52E-11223279No hitNo description
Gene3DG3DSA:4.10.280.101.5E-11223283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13225292IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.056225274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-8229274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-9231280IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0048658Biological Processanther wall tapetum development
GO:0052543Biological Processcallose deposition in cell wall
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MYEDNSCFEP NPTVEAIVDN NGGYYDSTTA TEKDFTVSHQ FQPPVMISGT TTNTFNDELK  60
LPTMDDFSVF PSAVSFQNSE TQNQISNDNN NMIHQMIRDS TWDASVDNYG FFMNTSDQNT  120
TATTTPIPDL LSLLHLPKCS VPLPSSNLSD IMSGSCISYD PLFHLNLPPQ PPLILTPNDY  180
SGFFLGTDAN TQRDQQNVGD ENNNDQFDSG IIEFSKNIRR KRRGKQKNKP FTTERERRCH  240
LNERYEALKL LIPNPSKGDR ASILQDGIDY INELRRRVSE LKYLVERKRC GGRHKNNNEV  300
DNNNNNTNLD DRNIVNDDDG ENMEKKTESD VIDQCSSNNS LRCSWLQRKS KVTEVDVRIV  360
DDEVTIKVVQ KKKINCLLVV TKVLDQLHLD LHHVSGGQIG EHYSFLLNTK INEGSTIYAS  420
AIANKVIEVV DQHYMAALPI NSY
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00496.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018481763.10.0PREDICTED: transcription factor bHLH91-like
SwissprotQ8GX460.0BH091_ARATH; Transcription factor bHLH91
TrEMBLA0A3P6CVF10.0A0A3P6CVF1_BRAOL; Uncharacterized protein
STRINGBo4g176060.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13552696
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31210.10.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Cui J, et al.
    Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development.
    Plant Cell, 2016. 28(5): p. 1078-93
    [PMID:27113773]
  3. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]