PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00497.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family BBR-BPC
Protein Properties Length: 279aa    MW: 31323.4 Da    PI: 10.0128
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00497.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind342.21.3e-10412791301
                GAGA_bind   1 mdddgsrernkgyyepa..aslkenlglqlmssiaerdaki....rernlalsekkaavaerd......maflqrdkalaernkal 74 
                              mdddg+  rn+gyyepa  +++k nlglqlmss  +r++k+    r+ nl +++++++++++       m++    +++++     
  Rsa1.0_00497.1_g00002.1   1 MDDDGF--RNWGYYEPAaaTTFKGNLGLQLMSSA-DRNTKPflpgRDPNL-MMSQNGSYHHHHseppihMSY----NWINQ----- 73 
                              99**99..9******99889*************9.9**************.888888888887788888888....9****..... PP

                GAGA_bind  75 verdnkllalllvenslasalpvgvqvlsgtksidslqqlse..pqledsavelreeeklealpieeaaeeakekkkkkkrqrakk 158
                                +++k++++l+v+++     p++ ++l++t+s+ s++++++  +q+e+++v+ +eee++ +       +  ++k+k++++++a++
  Rsa1.0_00497.1_g00002.1  74 --QKDKFFNMLPVTTT-----PNYGNALPETSSAPSMHHHHHhhHQTEETPVKCEEEEETVQ-------P--NKKRKTNSKASATT 143
                              ..899*******9986.....9999********99999855534677777776444442221.......2..22333333466777 PP

                GAGA_bind 159 pkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPL 244
                              +k kk +k+k+     ++++k++   +r+k  kks+dlv+ngv++D+s+lPvPvC+CtGa++qCY+WG+GGWqSaCCtt+iS++PL
  Rsa1.0_00497.1_g00002.1 144 TKGKKPRKPKE-----ENDNKTNV--SRVKPAKKSVDLVINGVNMDISGLPVPVCTCTGAPQQCYRWGCGGWQSACCTTNISMHPL 222
                              77777777777.....23444444..689********************************************************* PP

                GAGA_bind 245 PvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301
                              P+stkrrgaRi+grKmSqgafkk+LekL+++G++++ p+DLk+hWA+HGtnkfvtir
  Rsa1.0_00497.1_g00002.1 223 PMSTKRRGARISGRKMSQGAFKKVLEKLSSDGFNFGSPIDLKSHWARHGTNKFVTIR 279
                              ********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF062176.7E-981279IPR010409GAGA-binding transcriptional activator
SMARTSM012261.8E-1661279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MDDDGFRNWG YYEPAAATTF KGNLGLQLMS SADRNTKPFL PGRDPNLMMS QNGSYHHHHS  60
EPPIHMSYNW INQQKDKFFN MLPVTTTPNY GNALPETSSA PSMHHHHHHH HQTEETPVKC  120
EEEEETVQPN KKRKTNSKAS ATTTKGKKPR KPKEENDNKT NVSRVKPAKK SVDLVINGVN  180
MDISGLPVPV CTCTGAPQQC YRWGCGGWQS ACCTTNISMH PLPMSTKRRG ARISGRKMSQ  240
GAFKKVLEKL SSDGFNFGSP IDLKSHWARH GTNKFVTIR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00497.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018462952.10.0PREDICTED: LOW QUALITY PROTEIN: protein BASIC PENTACYSTEINE2-like
SwissprotQ9LDE21e-166BPC2_ARATH; Protein BASIC PENTACYSTEINE2
TrEMBLA0A3P6GGC70.0A0A3P6GGC7_BRAOL; Uncharacterized protein
STRINGBo8g066170.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28932769
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.31e-147basic pentacysteine 2
Publications ? help Back to Top
  1. Brand LH,Kirchler T,Hummel S,Chaban C,Wanke D
    DPI-ELISA: a fast and versatile method to specify the binding of plant transcription factors to DNA in vitro.
    Plant Methods, 2010. 6: p. 25
    [PMID:21108821]
  2. Simonini S,Kater MM
    Class I BASIC PENTACYSTEINE factors regulate HOMEOBOX genes involved in meristem size maintenance.
    J. Exp. Bot., 2014. 65(6): p. 1455-65
    [PMID:24482368]