PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00498.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 463aa    MW: 53114.5 Da    PI: 4.1838
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00498.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573957.5e-3065159397
                   DUF573   3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 
                               +++w+++De+++L  ++d++++ + s  +d+dafy +vk+ i++++s++ql++Kir+L k+f +++++ ++++ psf++++d++i
  Rsa1.0_00498.1_g00008.1  65 NKMVWTKDDELIILGSIVDYEKEMKLSHRSDWDAFYVYVKDFIEADFSRKQLTDKIRKLNKRFLGNKARCNDEEGPSFTSTEDDEI 150
                              689*********************************************************************************** PP

                   DUF573  89 felskkiWg 97 
                              f+ls++iW+
  Rsa1.0_00498.1_g00008.1 151 FKLSMIIWD 159
                              ********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045041.8E-2267159IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    Send to blast
MVLGKRTREY SNDSNSGCLE KLLTGKPISP SPLRRMQEDD VSGMEAMLRR RKQPRTTPVS  60
SSSNNKMVWT KDDELIILGS IVDYEKEMKL SHRSDWDAFY VYVKDFIEAD FSRKQLTDKI  120
RKLNKRFLGN KARCNDEEGP SFTSTEDDEI FKLSMIIWDT ANETECASDE NVDQAKDVPC  180
VDHERADENV DQAKDAPSVE HEPVNENMDQ AKVDVPHVEH DRVDENIEQA KVDAPYVDDE  240
LVDVDELNME QEKDAPSVEH ERVVDENMER EKVLELKKDA PCVEHEQVNN ADTDQEMDVP  300
CVEHEGVNEN MNQEEAISRT EDEPVSNVSI ETDKGEKEKS EEEFCALKDT LTDKENNEED  360
GVDEFCAMKD ILTDKEKEKE NNEEEDSVDE YCALKDAFEA TTFFQSIGKY QQKVLLENLK  420
NLSGPRRKEL ADECKELIDE EMKLCAKKLS FSTKLASAWE SSC
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00498.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018484331.10.0PREDICTED: GLABROUS1 enhancer-binding protein-like 3 isoform X1
TrEMBLA0A397ZWE80.0A0A397ZWE8_BRACM; Uncharacterized protein
STRINGBo4g186180.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM124401528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36340.14e-80DNA-binding storekeeper protein-related transcriptional regulator