PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00505.1_g00001.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 190aa    MW: 21536.8 Da    PI: 6.8076
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00505.1_g00001.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.76.5e-1476120347
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                              +W+++E++l++ + k++G+g+W++I+r +  +Rt+ q+ s+ qky
  Rsa1.0_00505.1_g00001.1  76 PWSEDEHKLFLIGLKRYGKGDWRSISRNVLVTRTPTQVASHAQKY 120
                              8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.41669125IPR017930Myb domain
SuperFamilySSF466891.27E-1571126IPR009057Homeodomain-like
TIGRFAMsTIGR015577.6E-1672124IPR006447Myb domain, plants
SMARTSM007174.5E-1073123IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-1075119IPR009057Homeodomain-like
CDDcd001678.95E-1076121No hitNo description
PfamPF002495.9E-1276120IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MFEEALVFFP EGSPNRWERI GYQLQKPAGD VFQIDSGQVN VPDYIDDSSS AAGWDSAGYI  60
SFGTKHGERE RKRGTPWSED EHKLFLIGLK RYGKGDWRSI SRNVLVTRTP TQVASHAQKY  120
FLRQNSVKKE RKRSSIHDIT TVDTNLAMPG SNVEWTGQQE SPVHTQQQIV SEFSQQLTPG  180
GHFEDFGFGI
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00505.1_g00001.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893881e-117AC189388.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB053D06, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018468770.11e-133PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-45DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A3P6AKD41e-119A0A3P6AKD4_BRACM; Uncharacterized protein
STRINGBo2g006670.11e-118(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.11e-100MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]