PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00509.1_g00014.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 256aa MW: 28131.9 Da PI: 6.909

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00509.1_g00014.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	91.5	1e-28	171	226	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQyq+Il+RR++Rak+e e+k ++ kpylheSRh+hA+rR+R+sgGrF Rsa1.0_00509.1_g00014.1 171 QEPVYVNAKQYQGILRRRKARAKAELERKA--TNGKPYLHESRHNHAVRRARASGGRF 226 69************************99..899********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	1.4E-28	169	229	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	31.774	170	229	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	5.8E-25	172	226	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	1.9E-21	173	195	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	175	195	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	1.9E-21	203	226	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MESNSGRGNE AEVNHNDAGQ QHQPMMYAEP WWKSNSFGVD RPSLVPSKSS SLEECPDGSE 60 SNDVHSAASE DDGACKDSQA PTSSPSVDNH GTEGNDPAQL AAPVGNMHCQ GQQLVQPPEL 120 VGHYIACVPN PYQDPYYGGM VGSYGHQQLQ GFHPYPGMPG ERTALPLDVT QEPVYVNAKQ 180 YQGILRRRKA RAKAELERKA TNGKPYLHES RHNHAVRRAR ASGGRFAKKT EAEVAAEREK 240 EKGFVQQPTR QALNRF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4g91_A	2e-14	170	231	1	64	HAPB protein
4g92_A	2e-14	170	231	1	64	HAPB protein
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00509.1_g00014.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018476840.1	1e-164	PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
Swissprot	Q9LXV5	1e-114	NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBL	A0A3P6APJ7	1e-118	A0A3P6APJ7_BRAOL; Uncharacterized protein
TrEMBL	V4LN10	1e-118	V4LN10_EUTSA; Uncharacterized protein
STRING	XP_006399770.1	1e-119	(Eutrema salsugineum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5946	26	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12840.3	2e-98	nuclear factor Y, subunit A1

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Siriwardana CL, et al. NUCLEAR FACTOR Y, Subunit A (NF-YA) Proteins Positively Regulate Flowering and Act Through FLOWERING LOCUS T. PLoS Genet., 2016. 12(12): p. e1006496 [PMID:27977687] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]