PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00517.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 224aa    MW: 25187.5 Da    PI: 5.9915
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00517.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601201.4e-3741031100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrrkC++ Cv+apyfp ++++++ ++hk+FGas+v k+l++l++++r+da++slvyeA+  + dPv+G+   i +lq+q
  Rsa1.0_00517.1_g00012.1   4 PCAACKYLRRKCTQACVFAPYFPPNKQEDYTAIHKVFGASQVAKILNDLHPSQRQDAVTSLVYEAQTLLLDPVHGCSLQICNLQRQ 89 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              l+ l+ +++ +++ 
  Rsa1.0_00517.1_g00012.1  90 LKDLQDQVQIARND 103
                              *******9998875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089124.7463104IPR004883Lateral organ boundaries, LOB
PfamPF031951.5E-374101IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MTTPCAACKY LRRKCTQACV FAPYFPPNKQ EDYTAIHKVF GASQVAKILN DLHPSQRQDA  60
VTSLVYEAQT LLLDPVHGCS LQICNLQRQL KDLQDQVQIA RNDLASYNNI VPSLDLQDQV  120
QIARNDLAPY NNIVPPLDLQ DQVQIARNDL APYNNIVPPL DLPPPITYQQ NIHNPMLMPV  180
VSNYGGQLTS QQLNEEAHRV ESEKSAQVKQ MQQNAAQSKR DDCP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A8e-37310710114LOB family transfactor Ramosa2.1
5ly0_B8e-37310710114LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00517.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018469585.11e-163PREDICTED: LOB domain-containing protein 28
TrEMBLA0A078IX904e-99A0A078IX90_BRANA; BnaC01g42240D protein
TrEMBLA0A0D3A9Q74e-99A0A0D3A9Q7_BRAOL; Uncharacterized protein
TrEMBLA0A3P6FCI44e-99A0A3P6FCI4_BRAOL; Uncharacterized protein
STRINGBo1g084820.11e-100(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13128340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50510.12e-49LOB domain-containing protein 28