PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00531.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 530aa    MW: 59868.7 Da    PI: 6.0177
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00531.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053533901355
                              HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                              R++ N++f+ Lr ++P+ +       ++K +iL  +++Y+++L+
  Rsa1.0_00531.1_g00003.1 353 RSKENEKFSVLRAMVPTvN------EVDKESILNNTIKYLQELE 390
                              6677*************65......8***************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.5E-3724201IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088810.982340389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.0E-8346395IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.36E-5353394No hitNo description
SuperFamilySSF474595.89E-9353405IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.1E-9353403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048629Biological Processtrichome patterning
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 530 aa     Download sequence    Send to blast
MPLTIMADGV EAARGGSKRK NSLLRKQLAV ALRSVQWSYA IFWSSSPTQS GVLEWEEGCY  60
NGDIKKRKKR YEAAHYKYAL QRSNQLRKLY LCMLEGDSNT TISTTHDVND HGDDEEHNCN  120
GTTSMMLSPD DLSDEECLPG RSLATGETIW LCNAQFADNK LFSRSLLART VVCFPYLGGV  180
IELGVTELIS EDHSLLQHIK FCLLETSKPD CVSINFSAHQ DSDDEKSQMK IKISDANSNS  240
LLQESHQIQI GTSDEDVHYK RTVSTLIKNA ADKDVHHLQP DQVSSNTGSS FLPWKQREQP  300
NSILLQEQSN LQPSSQNVVR KILQDVPLMH SLDTKRMPPS KMLGLNQDDP WDRSKENEKF  360
SVLRAMVPTV NEVDKESILN NTIKYLQELE GRVEELESCM ESVNFVERQR KSVNDSVLIE  420
ETSGNYDDST KIDGNSGETQ KVTIMRDETH LRVKLKETEV VMEVRCSYRD YIVADIMEAL  480
SKLHMDAFSV RSHTLNGFLT LNLKAKFRGA AVASVGMIKR ELRRIIGAII
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16468KKRKK
Functional Description ? help Back to Top
Source Description
UniProtTrancsription activator, when associated with MYB75/PAP1 or MYB90/PAP2. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00531.1_g00003.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4936640.0AB493664.1 Arabidopsis thaliana At4g00480 mRNA for hypothetical protein, partial cds, clone: RAAt4g00480.
GenBankAF2516970.0AF251697.1 Arabidopsis thaliana putative transcription factor BHLH12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018456140.10.0PREDICTED: transcription factor MYC1
SwissprotQ8W2F10.0BH012_ARATH; Transcription factor MYC1
TrEMBLA0A397XPP30.0A0A397XPP3_BRACM; Uncharacterized protein
STRINGBra037343.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM117701832
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00480.10.0bHLH family protein