PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00532.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GATA
Protein Properties Length: 201aa    MW: 22586.3 Da    PI: 6.5099
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00532.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA24.83.1e-08159179220
                     GATA   2 s..nCgttkTplWRrgpdgnk 20 
                              +  nC++++Tp+WR+gp g+k
  Rsa1.0_00532.1_g00004.1 159 TnkNCNAINTPMWRKGPLGPK 179
                              5559***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.50.101.3E-4161177IPR013088Zinc finger, NHR/GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 201 aa     Download sequence    Send to blast
MENELDLTLR LGLSSPTVET HLSLSTLAID QGNNVDGNRR DNNNDSEIFW KNNESTNDHE  60
GVRKNVDVNI QYYNLVFNHF AGIGETLNFA PFPTQPSPAP ATETPMGSEH VLIDVPAKRA  120
QRNSLAFKDA VDANATLVRR WGCSGACLAG RINEMRKCTN KNCNAINTPM WRKGPLGPKA  180
KFMQCLWDKV QEGEREERQW N
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00532.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018458232.11e-132PREDICTED: GATA transcription factor 29-like
SwissprotQ9LT454e-32GAT29_ARATH; GATA transcription factor 29
TrEMBLA0A3N6RJ341e-121A0A3N6RJ34_BRACR; Uncharacterized protein
STRINGBo1g108670.11e-119(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM106522234
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.12e-31GATA transcription factor 29
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]