PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00534.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bZIP
Protein Properties Length: 371aa    MW: 39983.4 Da    PI: 8.8009
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00534.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_143.38.1e-14314361555
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                              +r+rr++kNRe+A rsR+RK+a++ eLe ++++L++ N++L+ +  e   +
  Rsa1.0_00534.1_g00007.1 314 RRQRRMIKNRESAARSRARKQAYTLELEAEIEKLKKANQELRRKQAE---M 361
                              69***************************************955443...3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.0E-10310371IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.806312361IPR004827Basic-leucine zipper domain
CDDcd147074.40E-24314366No hitNo description
SuperFamilySSF579591.34E-9314362No hitNo description
PfamPF001704.5E-11314363IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1704.7E-13314361No hitNo description
PROSITE patternPS000360317332IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:1903648Biological Processpositive regulation of chlorophyll catabolic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MGTHINFNNL GGGGDPGGEG FNQMKPTDSA YPLARQSSLY SLTFDELQTT LLGGPGKDLG  60
SMNMDELLKS IWTAEESQAM AMTMTSSAQA TAVTQQPGGG GGGGNLQRQG SLTLPRTISQ  120
KTVDEVWKFL ITKDEGGSSG GGGGESNAPQ RQQTLGEMTL EEFLFRAGVV REDNNSSQQM  180
GQVGNNNNSN GFYGNNGAPV GLGFEFGQQN HNSISFNNGA NDSMILNQPP GLGLKVGGTM  240
QQQQQLNQPH PQQQRVPQII FPKQANFAFA APGVTAAATS PGTSSAENNS LSPVDYVLNR  300
GRRSNTGLEK VIERRQRRMI KNRESAARSR ARKQAYTLEL EAEIEKLKKA NQELRRKQAE  360
MVEMQKNEVA V
Functional Description ? help Back to Top
Source Description
UniProtFunctions as transcriptional activator in the ABA-inducible expression of rd29B. Binds specifically to the ABA-responsive element (ABRE) of the rd29B gene promoter. {ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:11884679, ECO:0000269|PubMed:15361142, ECO:0000269|PubMed:16463099}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00534.1_g00007.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought, salt, abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868, ECO:0000269|PubMed:11005831, ECO:0000269|PubMed:16284313, ECO:0000269|PubMed:16463099}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJQ9719741e-104JQ971974.1 Eutrema salsugineum abscisic acid responsive elements-binding factor 4 (ABF4) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018492324.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X2
RefseqXP_018492326.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X3
RefseqXP_018492327.10.0PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 isoform X3
SwissprotQ9M7Q21e-158AI5L7_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 7
TrEMBLA0A3N6R4K21e-171A0A3N6R4K2_BRACR; Uncharacterized protein
STRINGfgenesh2_kg.3__2145__AT3G19290.11e-167(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73427129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19290.11e-113ABRE binding factor 4
Publications ? help Back to Top
  1. Gao S, et al.
    ABF2, ABF3, and ABF4 Promote ABA-Mediated Chlorophyll Degradation and Leaf Senescence by Transcriptional Activation of Chlorophyll Catabolic Genes and Senescence-Associated Genes in Arabidopsis.
    Mol Plant, 2016. 9(9): p. 1272-1285
    [PMID:27373216]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]
  3. Muñiz García MN,Cortelezzi JI,Fumagalli M,Capiati DA
    Expression of the Arabidopsis ABF4 gene in potato increases tuber yield, improves tuber quality and enhances salt and drought tolerance.
    Plant Mol. Biol., 2018. 98(1-2): p. 137-152
    [PMID:30143991]