PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00536.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 416aa    MW: 45635.8 Da    PI: 9.7635
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00536.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.26.9e-06177199223
                              EETTTTEEESSHHHHHHHHHH.T CS
                  zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                               Cp Cg+sF+  ++L++H+ + H
  Rsa1.0_00536.1_g00008.1 177 ACPQCGESFPKLETLEHHQAVrH 199
                              6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280176199IPR007087Zinc finger, C2H2
PROSITE profilePS501579.016176204IPR007087Zinc finger, C2H2
SuperFamilySSF563992.01E-23201412No hitNo description
Gene3DG3DSA:3.90.228.105.5E-15206413IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MAPVPFIPNQ TQSQTRLSSS DLKKKKNRKK QTPLPHTQTQ SLQQKTVQSP SSSWSQIKNL  60
LSCKQIEGPG VHEPSKITSS SCGSSLCKFS DVIYGNARVI HRSDHSPESS NLGQNAGLLT  120
RKPVTRGFSS TARSNGCGAY TSYSSSKAMH FGKLSGCYEC HMIVDPSRYP VSPRICACPQ  180
CGESFPKLET LEHHQAVRHA VSELGPDDSG RNIVDIIFKS SWLRKDSPIY KIERILKVHN  240
TQRTIQRFEE CRDAVKSHAH ASTRKEPRSA ADGNELLRFH CTTVSCSLGS RGSTSLCSNF  300
PGCRVCTIIR HGFHAKMLRL GGGANEIKGV RTTASSGRAH DASRCFDQRR AMLVCRVIAG  360
RVRRVQSDAP EDENGSGSYD SVAGPAGVYT NLEDLVVFNP KAILPCFVVI YKVSEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00536.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288790.0AK228879.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL16-20-B08.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009107404.10.0PREDICTED: uncharacterized protein LOC103833057
TrEMBLA0A1J3EID50.0A0A1J3EID5_NOCCA; Uncharacterized protein
STRINGBra014094.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19162880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.11e-152C2H2-like zinc finger protein