PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00537.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family EIL
Protein Properties Length: 519aa    MW: 58653.6 Da    PI: 5.0823
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00537.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3317.53.8e-97592581212
                              XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpveg 86 
                              e+l++rm kd+++lkr+ke++k   ++k      ++ +k+++qa+rkkmsraQDgiLkYMlk mevc+ +GfvYgiipekgkpv+g
  Rsa1.0_00537.1_g00005.1  59 EDLERRMLKDRVRLKRIKEQTKTGSQTK------ETPKKISDQAQRKKMSRAQDGILKYMLKLMEVCKLRGFVYGIIPEKGKPVSG 138
                              89*******************9865333......45779*********************************************** PP

                              XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS
                     EIN3  87 asdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172
                              +sd++ra Wk kv+fd+ngpaai+ky+ + l+lsge ++      + +sl++lqD+tlgSLLs+lmqhcdppqr++ple+gv+pPW
  Rsa1.0_00537.1_g00005.1 139 SSDNIRAGWKVKVRFDKNGPAAIAKYEEERLALSGEPDR------NRNSLQDLQDATLGSLLSSLMQHCDPPQRKYPLERGVAPPW 218
                              **********************************87666......789************************************** PP

                              ---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHH CS
                     EIN3 173 WPtGkelwwgelglskdqgtppykkphdlkkawkvsvLta 212
                              WPtG+e+ww +lgl k+q++ppy+kphdlkk+wkv+vLta
  Rsa1.0_00537.1_g00005.1 219 WPTGEEEWWVKLGLGKSQSPPPYRKPHDLKKMWKVGVLTA 258
                              **************************************98 PP
2EIN322.41.9e-07259337236323
                              TT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                     EIN3 236 dkmsakesfallsvlnqeekecatvsahssslrkqspkvtlsceqkedvegkkeskikhvqavkttagfpvvrkrkkkpsesakvs 321
                              dkm+akes+++l+vlnqee+++++ s++ +      ++ + +++  e+      s +++ q v+ +++++ +++rk+++s++++ +
  Rsa1.0_00537.1_g00005.1 259 DKMTAKESAIWLAVLNQEESLIQQHSSDDN-----GTSNVTETHRREEAS---GSVTATLQPVRDQDKAEKHQRRKRPRSRKEAEQ 336
                              8*******************9977666643.....222333333333333...333345666666666777777775555554433 PP

                              XX CS
                     EIN3 322 sk 323
                               +
  Rsa1.0_00537.1_g00005.1 337 -R 337
                              .3 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048731.8E-9959258No hitNo description
Gene3DG3DSA:1.10.3180.104.3E-43179258IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167689.68E-44180280IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene3DG3DSA:1.10.3180.106.9E-5259285IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 519 aa     Download sequence    Send to blast
MAGTDLATCV PDISLYSFLV LRWIRTDDMI PKRMENEPDD LASDNAAEID VSDEDIDAED  60
LERRMLKDRV RLKRIKEQTK TGSQTKETPK KISDQAQRKK MSRAQDGILK YMLKLMEVCK  120
LRGFVYGIIP EKGKPVSGSS DNIRAGWKVK VRFDKNGPAA IAKYEEERLA LSGEPDRNRN  180
SLQDLQDATL GSLLSSLMQH CDPPQRKYPL ERGVAPPWWP TGEEEWWVKL GLGKSQSPPP  240
YRKPHDLKKM WKVGVLTADK MTAKESAIWL AVLNQEESLI QQHSSDDNGT SNVTETHRRE  300
EASGSVTATL QPVRDQDKAE KHQRRKRPRS RKEAEQRNII HDMNHVDAPM LEHNINGTHH  360
HDEGVLEPNI ALGAEENGME LVVPEFDNNY TYLPPVDGHA MMPVDERPIV YGPNLNQELQ  420
FGSGYNFYNP SAVFVNNQEQ DLIEMNPSHN NGFEASVGVL QPHGLHEEGV AGRDLPPQFQ  480
SDSNILSPFN ELAAFESSTF YSGFDSYGAF DDDFSWFGA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A4e-5518228212134ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in the ethylene response pathway. {ECO:0000269|PubMed:9215635, ECO:0000269|PubMed:9851977}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00537.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018460141.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
RefseqXP_018460142.10.0PREDICTED: ETHYLENE INSENSITIVE 3-like 3 protein
SwissprotO231160.0EIL3_ARATH; ETHYLENE INSENSITIVE 3-like 3 protein
TrEMBLA0A078I9Z10.0A0A078I9Z1_BRANA; BnaA02g16550D protein
TrEMBLA0A398ABY10.0A0A398ABY1_BRACM; Uncharacterized protein
TrEMBLA0A3P6AH820.0A0A3P6AH82_BRACM; Uncharacterized protein (Fragment)
STRINGBra008110.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46582548
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.10.0ETHYLENE-INSENSITIVE3-like 3
Publications ? help Back to Top
  1. Frerigmann H,Gigolashvili T
    Update on the role of R2R3-MYBs in the regulation of glucosinolates upon sulfur deficiency.
    Front Plant Sci, 2014. 5: p. 626
    [PMID:25426131]
  2. Zheng ZL,Zhang B,Leustek T
    Transceptors at the boundary of nutrient transporters and receptors: a new role for Arabidopsis SULTR1;2 in sulfur sensing.
    Front Plant Sci, 2014. 5: p. 710
    [PMID:25566284]
  3. Panda SK,Sunkar R
    Nutrient- and other stress-responsive microRNAs in plants: Role for thiol-based redox signaling.
    Plant Signal Behav, 2015. 10(4): p. e1010916
    [PMID:25912823]
  4. Wawrzyńska A,Sirko A
    EIN3 interferes with the sulfur deficiency signaling in Arabidopsis thaliana through direct interaction with the SLIM1 transcription factor.
    Plant Sci., 2016. 253: p. 50-57
    [PMID:27968996]