PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00543.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 666aa    MW: 74301.2 Da    PI: 5.4801
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00543.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.21.8e-08558606348
                              SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
          Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                              +W+  E ++lv++v q+G g W+ I +        Rt+ ++k++w+++l
  Rsa1.0_00543.1_g00008.1 558 AWSLSEVKKLVEGVSQYGVGKWSVIKKLTFsshSYRTPVDLKDKWRNLL 606
                              7*************************998889*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.903551610IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-13552613IPR009057Homeodomain-like
SMARTSM007171.0E-9555608IPR001005SANT/Myb domain
SuperFamilySSF466891.94E-16557616IPR009057Homeodomain-like
CDDcd116605.92E-20557607No hitNo description
PfamPF139218.7E-8559617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MGTMFGSVED YGEMFRDTAA QTRDPSLSSE NYIGTPVVYK LVRVAQDGRL VPATDEEMLE  60
VKDLVENNEN DMPIAPDPGQ TEECIFDVGS PSQFLQLDSF EGSVTITLKH IIQPFACSNR  120
LVCLYVFLIM KSFVPLGDNF AYPTQLLNPG LFQPETVEAY TENLNSRLEC KEELVYGSEM  180
LFTLPDTNYQ SSNEFPWNEE FVQSEVFLQE PISFSSNGCS VDQSIGDVSA YSIATGGSPK  240
APALSASASN TGFSGDRDEI CLGNLSIKAL QETFRATFGR ETTCKDKLWL KRKIEMGLIR  300
PRVMPTNDNG LIIGGQDNCT GTVVAVSKDT VDEGRANTCK DTPSTPDCTD DFEDSLIEAS  360
VDHYSGNEDF EGEYRSAKRV RKATRRYIEE ISKLEEQQQS KESLIPSKDE RSISTVSSGR  420
RVVVTRMVSL GGSIIQVPYV SHVRRSRPRE NIMALGEFHS GLWEVKATPE ESDLNLSQTQ  480
LNNDVNRVSG VKSVSGPVQK KVTSHRQSYE DHSKPEVDQD TMEPEYMDSS GDSSDDSTYS  540
HADRPIMQSA MRRKHHRAWS LSEVKKLVEG VSQYGVGKWS VIKKLTFSSH SYRTPVDLKD  600
KWRNLLRASF SRTPLNKMGK HGSMAIPSQV LSQVRELAQK KSHVSPARKA RMVRASSRHV  660
AAENLR
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00543.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018437101.10.0PREDICTED: uncharacterized protein LOC108809456
TrEMBLA0A0D3CB180.0A0A0D3CB18_BRAOL; Uncharacterized protein
TrEMBLA0A3P6F5Z00.0A0A3P6F5Z0_BRAOL; Uncharacterized protein
STRINGBo5g023810.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM43642649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.20.0TRF-like 3