PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00548.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GeBP
Protein Properties Length: 153aa    MW: 17121.9 Da    PI: 5.0719
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00548.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57366.46.6e-21781482497
                   DUF573  24 aktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                              +++gk+p++d   +ye +k+s s++++ +q++eKir++++K++ k+ +   g++ s s++h+qk+f+lsk iWg
  Rsa1.0_00548.1_g00003.1  78 DTKGKNPVQDNRPLYESMKGSFSSDITLRQFSEKIRNMRRKYTAKEMR---GEQASASNPHQQKCFQLSKAIWG 148
                              579*******************************************99...**********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.3E-1878148IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MANNLKHPLE DPPSISSSAG DFLFISSQEE DEEEDQHTIF SSDEGEPEDP PLRSSSEAKL  60
PGRKLRSGGI STNVTIIDTK GKNPVQDNRP LYESMKGSFS SDITLRQFSE KIRNMRRKYT  120
AKEMRGEQAS ASNPHQQKCF QLSKAIWGVD SEC
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00548.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009139867.14e-73PREDICTED: probable transcription factor At1g66420
RefseqXP_013745191.14e-73probable transcription factor At1g66420
TrEMBLA0A3P6CNB01e-68A0A3P6CNB0_BRACM; Uncharacterized protein
TrEMBLM4EH408e-69M4EH40_BRARP; Uncharacterized protein
STRINGBra028105.1-P1e-69(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13542721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.15e-13DNA-binding storekeeper protein-related transcriptional regulator