PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00550.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C3H
Protein Properties Length: 454aa    MW: 48860.6 Da    PI: 8.6532
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00550.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.67.8e-124569327
                             S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH  3 telCrffartGtCkyGdrCkFaHgp 27
                             ++ C +++rtG C yG+rC+F+H++
  Rsa1.0_00550.1_g00011.1 45 EPDCIYYLRTGVCGYGSRCRFNHPR 69
                             589********************96 PP
2zf-CCCH37.24.9e-1290115227
                              -S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                              +++ C++f+rtGtC++G++Ck++H++
  Rsa1.0_00550.1_g00011.1  90 GQPVCQHFMRTGTCRFGATCKYHHPR 115
                              5789********************96 PP
3zf-CCCH39.97.2e-13138162226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                              ++++C++++rtG+Ck+G++C+F+H+
  Rsa1.0_00550.1_g00011.1 138 GEKECSYYMRTGQCKFGSTCRFHHP 162
                              7899********************9 PP
4zf-CCCH41.13e-13288313126
                              --S---SGGGGTS--TTTTT-SS-SS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                              +++++C++f+rtG Ck+G++C+F+H+
  Rsa1.0_00550.1_g00011.1 288 PGQPECQYFMRTGDCKFGNSCRFHHP 313
                              5789*********************9 PP
5zf-CCCH33.95.3e-11333359127
                              --S---SGGGGTS--TTTTT-SS-SSS CS
                  zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                              ++t+ C++fa+ G+Ck+G++CkF H++
  Rsa1.0_00550.1_g00011.1 333 PGTAQCSHFAQHGFCKFGPSCKFDHSM 359
                              689**********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.5734270IPR000571Zinc finger, CCCH-type
SMARTSM003567.7E-54269IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-94569IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-64671IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-54869IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.94888116IPR000571Zinc finger, CCCH-type
SMARTSM003565.3E-688115IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-690116IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-990115IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.9E-593115IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.356136164IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6136163IPR000571Zinc finger, CCCH-type
PfamPF006422.4E-10138162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4142161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.07287315IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-7287314IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-10289313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-6291315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-5293313IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.868332360IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-5332359IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.92E-6333360IPR000571Zinc finger, CCCH-type
PfamPF006422.6E-8333358IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.3E-4336358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MERYGRAGEQ GSRSDPSLET GIQGSMWRLG LGGGGGESYP ERLSEPDCIY YLRTGVCGYG  60
SRCRFNHPRN RAPVLGGLRT EAGEFPERMG QPVCQHFMRT GTCRFGATCK YHHPRQGGRD  120
SVTTPTSLSY MGFPLRPGEK ECSYYMRTGQ CKFGSTCRFH HPVPPGVQAP SHQQQQLSTG  180
SAIYPPLQSQ SFPSSQQFGV AIPRPQLLPG SYLQSPYAYN QMLLPPPPPP GMVPYSGWNP  240
YQASLSAMPS PGTQPSMGSS SIYGIRPLSP PAPAYPSSNN EQTFPQRPGQ PECQYFMRTG  300
DCKFGNSCRF HHPLEAASPK GVSLSHIGLP LRPGTAQCSH FAQHGFCKFG PSCKFDHSMA  360
SSSLSYSTSA SSLTDMPVPY PLVSSSLLTL APSSSSSMSD LRTELHSSSS IKRTNTTSGG  420
SETLASSMAS GVSHSESAES KNGDSTSIEV KTSS
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00550.1_g00011.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018454621.10.0PREDICTED: zinc finger CCCH domain-containing protein 58
SwissprotQ6NPN30.0C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBLA0A0D3AJS60.0A0A0D3AJS6_BRAOL; Uncharacterized protein
STRINGBo2g016570.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18550.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]