PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00553.1_g00014.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

NF-YA

Protein Properties

Length: 268aa MW: 29540.5 Da PI: 9.6865

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00553.1_g00014.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	92.6	4.9e-29	141	198	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d++++VN+KQy++I++RRq+Rak++ ++k+++ ++py+h+SRh hA+rRpRgsgGrF Rsa1.0_00553.1_g00014.1 141 DDTIFVNSKQYHGIIRRRQSRAKAALKNKISSCRKQPYMHHSRHLHAMRRPRGSGGRF 198 578*************************9999*********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.1E-32	139	201	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	34.495	140	201	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	4.8E-24	143	198	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.1E-20	143	165	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	4.1E-20	175	198	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 268 aa Download sequence Send to blast
MQTEYRKERE EHFSPPPQIS CLWNIAFGSP ALTTESLSSD SLAGVKVVTP ETKSEQGVDK 60 QSSATLLTFS PGGGKSSIDV SKPHAAFTVQ PACFEFGFAQ PTIYTKHPDH VEPYYGVVSG 120 YGSQISPGRV MLPLKMETEE DDTIFVNSKQ YHGIIRRRQS RAKAALKNKI SSCRKQPYMH 180 HSRHLHAMRR PRGSGGRFLN AKKADAALQS KPSTSQCSEV FHPKNGTIVS DSDVTSMDHF 240 LSSSVHSNVS NMVMPSKWIA AAMDILKI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	4e-15	141	214	2	74	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00553.1_g00014.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018443987.1	0.0	PREDICTED: nuclear transcription factor Y subunit A-10 isoform X1
Swissprot	Q8LFU0	1e-119	NFYAA_ARATH; Nuclear transcription factor Y subunit A-10
TrEMBL	A0A3P6E4V7	1e-149	A0A3P6E4V7_BRAOL; Uncharacterized protein
STRING	Bo9g176100.1	1e-148	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3008	27	67

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06510.2	1e-114	nuclear factor Y, subunit A10

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]