PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00566.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family LBD
Protein Properties Length: 207aa    MW: 23162.3 Da    PI: 4.5182
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00566.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260135.52e-42321311100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +CaaCk+lrr+C ++Cvlapyfp ++p+kf ++h++FGasn++kll++lpe++r+da++slvyeAear+rdPvyG++g i +lq+q
  Rsa1.0_00566.1_g00002.1  32 PCAACKILRRRCGEKCVLAPYFPPTEPAKFSIAHRVFGASNIVKLLQELPESQRTDAVKSLVYEAEARIRDPVYGSAGAIYNLQRQ 117
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              +++l+aela+++ e
  Rsa1.0_00566.1_g00002.1 118 VSELQAELAKAQVE 131
                              *********99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.44531132IPR004883Lateral organ boundaries, LOB
PfamPF031956.0E-4232129IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MLDMESKGDA SAAIIYASPA SSPPPTRVVL SPCAACKILR RRCGEKCVLA PYFPPTEPAK  60
FSIAHRVFGA SNIVKLLQEL PESQRTDAVK SLVYEAEARI RDPVYGSAGA IYNLQRQVSE  120
LQAELAKAQV EIVSMQFQRS NLLELIQNMD QRNQEQQNMM AFESSLGNCE HDEFISSSDE  180
ESNDFGFLED KYFNTNSLML WCDPLLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-43241333112LOB family transfactor Ramosa2.1
5ly0_B9e-43241333112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00566.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489520.11e-153PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR05e-94LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A3N6REW41e-146A0A3N6REW4_BRACR; Uncharacterized protein
STRINGBo8g112780.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-94LOB domain-containing protein 1