PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00571.1_g00025.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family MYB_related
Protein Properties Length: 82aa    MW: 9490.62 Da    PI: 10.225
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00571.1_g00025.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.68e-101459245
                             SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
          Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                              +WT+  d+++  a +++ ++   +W+ +ar +g g++ +++k r+ 
  Rsa1.0_00571.1_g00025.1 14 SSWTAKQDKQFEMALAKFEKDtpdRWHNVARAVG-GKSVEEVKRRYE 59
                             58********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.9081166IPR017884SANT domain
SMARTSM007176.0E-91264IPR001005SANT/Myb domain
SuperFamilySSF466895.77E-131470IPR009057Homeodomain-like
PfamPF002495.7E-81459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.9E-51663IPR009057Homeodomain-like
CDDcd001671.30E-61662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MASNSIITSR SSTSSWTAKQ DKQFEMALAK FEKDTPDRWH NVARAVGGKS VEEVKRRYEL  60
LVRDVNDIES GRYPLPRYRN TN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-26682177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00571.1_g00025.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489414.12e-55PREDICTED: protein RADIALIS-like 4
SwissprotQ1G3C44e-36RADL4_ARATH; Protein RADIALIS-like 4
TrEMBLA0A3N6S3Q28e-39A0A3N6S3Q2_BRACR; Uncharacterized protein
TrEMBLV4M3579e-39V4M357_EUTSA; Uncharacterized protein
STRINGBostr.18351s0300.1.p1e-39(Boechera stricta)
STRINGXP_006409166.11e-39(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22128198
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.18e-38RAD-like 4