PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00575.1_g00011.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family HB-PHD
Protein Properties Length: 844aa    MW: 95744.6 Da    PI: 4.4186
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00575.1_g00011.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.51.5e-104865291053
                              HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHH CS
                 Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRa 53 
                                +e L ++F++n  ps++ r  L+k+l+L+ ++V+ WF+N R+
  Rsa1.0_00575.1_g00011.1 486 AAVEKLRQVFAENELPSKSVRDSLSKELSLDPEKVSKWFKNTRY 529
                              67899*************************************97 PP
2PHD31.63.8e-11188227137
                              SBTTTSS..TCTTSSEEEBS.SSSSEEETTTSTSSSSHHS CS
                      PHD   1 rCkvCgk..sdeegelvlCd.gCkewfHlkClglklesee 37 
                              +C+ C++  +  +++++lCd +C+++fH+kCl+++le+e+
  Rsa1.0_00575.1_g00011.1 188 FCAECNSreASLDNDIILCDgTCNRAFHQKCLDPPLETES 227
                              6999**965555********56*************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.77E-10180229IPR011011Zinc finger, FYVE/PHD-type
PROSITE profilePS500169.926186274IPR019787Zinc finger, PHD-finger
CDDcd155041.92E-25188271No hitNo description
SMARTSM002491.2E-6188272IPR001965Zinc finger, PHD-type
PfamPF006283.7E-8188227IPR019787Zinc finger, PHD-finger
Gene3DG3DSA:3.30.40.102.2E-11188225IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:3.30.40.102.2E-11259274IPR013083Zinc finger, RING/FYVE/PHD-type
Gene3DG3DSA:1.10.10.604.4E-12462528IPR009057Homeodomain-like
PROSITE profilePS5007112.552474534IPR001356Homeobox domain
SuperFamilySSF466894.28E-10474538IPR009057Homeodomain-like
SMARTSM003891.0E-10476538IPR001356Homeobox domain
CDDcd000865.56E-8477529No hitNo description
PfamPF000465.2E-8486529IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MEESETKGKK VKKETEKACV SVERAESTLL SSLVKKKGKE TTSKRKYNKR KTEEEICSKF  60
SNKKYSLGEE EDEGKKRRKR KSKTQQKGNK VVEEVDEALR LQRRTRYLLI KMKMQQNLID  120
AYAAEGWKGQ SREKIRPDKE LERARKHILD CKLGLREAIR QLDLLSSVGR MEEKVMGPDG  180
SIHHDHIFCA ECNSREASLD NDIILCDGTC NRAFHQKCLD PPLETESSML LSIYWLLRES  240
IQCLASPPDF IFFYVISTVP PGDQGWFCKF CDCKIEIIDT MNAQIGTQYP VDSNWQDIFN  300
EEASLRVGSE AALNKEADWP SDDSEDGDYD PEMKERSNSR SDSGGGGGGD NDGESISTSV  360
SLASDGVALS TGSWEVQEFG NVVESGETSN EETVHGPRQR KTVDYTKLYH EMFGKDAVLQ  420
EQGSEDEDWG PSDRRKRRKE SDAVAMCENS KRDQDVVEET VEQSERDSVS VEGKGGRRPI  480
FRIPRAAVEK LRQVFAENEL PSKSVRDSLS KELSLDPEKV SKWFKNTRYM ALKNRKAESV  540
KQPEESKASS GDSVPEAAAM EKNTEANEIQ DTVEENKETN EVQDTMDDAV VEKNTEASEV  600
QETVDETVTE ESKETNEIQD TVEETVVEER TETNEVQETL DESVVEKNTE TNEVQDTMDG  660
ETNTETNEIQ ETVDEAAMEK NTETNEVENT MDGETITEAN EIQDTMDKSV LLKFNDPTNQ  720
TTVSPCHEEI QQANNSFPTP IEDQKSQPYV EQKDSSLTLL PQEEVSSQMS LETSLEDKER  780
KKEEELEAVM EMLCRAENKL LDVTQRLERF RTPKGRKKLG KSYSSLHEED SVVYVPTAEI  840
KESR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17478KKRRK
27480KKRRKRK
3434439RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtSpecifically binds to the fungal elicitor-responsive DNA element, 5'-CTAATTGTTTA-3', of the gene PR2 promoter.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00575.1_g00011.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By pathogen infection.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018450297.10.0PREDICTED: LOW QUALITY PROTEIN: pathogenesis-related homeodomain protein-like
SwissprotP487850.0PRH_ARATH; Pathogenesis-related homeodomain protein
TrEMBLA0A078FM680.0A0A078FM68_BRANA; BnaA08g13270D protein
STRINGBra010310.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86992738
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29940.10.0pathogenesis related homeodomain protein A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]