PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00576.1_g00012.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family TCP
Protein Properties Length: 494aa    MW: 54781.3 Da    PI: 6.3406
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00576.1_g00012.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP94.52e-29191281366
                      TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt....................... 65 
                              g+kdrhsk++T +g+RdRR+Rls+++a++++dLqd+LG+ ++sk ++WLl++ak+ +++l+ +                       
  Rsa1.0_00576.1_g00012.1 191 GGKDRHSKVCTVRGLRDRRIRLSVPTAIQLYDLQDRLGLSQPSKVVDWLLEAAKEDVDKLPPLqfphgfnqmypnlffgnsgiges 276
                              78*************************************************************55555554444444444444433 PP

                      TCP  66 ....s 66 
                                  s
  Rsa1.0_00576.1_g00012.1 277 ssstS 281
                              32220 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509741.41E-533111IPR011045Nitrous oxide reductase, N-terminal
Gene3DG3DSA:2.130.10.104.4E-438113IPR015943WD40/YVTN repeat-like-containing domain
PROSITE profilePS5136929.773192250IPR017887Transcription factor TCP subgroup
PfamPF036342.0E-27192319IPR005333Transcription factor, TCP
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 494 aa     Download sequence    Send to blast
MASSKLFFSD LRTGRCSSVV EARLLRFTLE CVVSRIYYQD GQRTNEESIG VGNQPNDLCL  60
APLSPGLFLV AFESGVVLIR LEKVVSTINL GFTVTALAVT PDGTEAIVGS QDDLFFTRKD  120
QLIEMRSREC NEDEIQAKQE GDHNDNNNHQ VDLNNMLQQQ QQNQPSSLSS SRQWTSAFRN  180
PRIVRVSRTF GGKDRHSKVC TVRGLRDRRI RLSVPTAIQL YDLQDRLGLS QPSKVVDWLL  240
EAAKEDVDKL PPLQFPHGFN QMYPNLFFGN SGIGESSSST SAFPGTNLGF LESYDLGGSS  300
LRSRSRIQDT TTTPRESFDL DKGKWIKHDE NTNHHQGHGF DTNHQHFSLT NPYSNNNNTS  360
SYYNLGHLQH SLDQSGNNVT VAISNVPSND NSNNLNMPPP SSAGDGSQLF FGPPPPAMSS  420
LFPTYPSFLG ASQHQHHHVV DGAGNLQLFS SNANPASQQQ MMTGNSSLIR PFHHLMSSNH  480
DTDRHSSDDN DSDS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-18197251155Putative transcription factor PCF6
5zkt_B1e-18197251155Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00065PBMTransfer from AT5G60970Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00576.1_g00012.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488994.10.0PREDICTED: transcription factor TCP5
SwissprotQ9FME30.0TCP5_ARATH; Transcription factor TCP5
TrEMBLA0A078J6M40.0A0A078J6M4_BRANA; BnaC07g49840D protein
TrEMBLA0A3P6E5P10.0A0A3P6E5P1_BRAOL; Uncharacterized protein
STRINGBo7g098260.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35762763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60970.11e-144TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 5
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]