PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00607.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family M-type_MADS
Protein Properties Length: 145aa    MW: 17091.1 Da    PI: 10.0309
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00607.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.53e-071153345
                             --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
                   SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                              e+++     fsk +ngi+ K +EL  L ++ v v+i+s tgk
  Rsa1.0_00607.1_g00004.1 11 TESSISEDAIFSKCLNGIFEKSNELARLYNVIVVVMIVSFTGK 53
                             5788888889*****************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006611.479161IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-9969IPR002100Transcription factor, MADS-box
PfamPF003191.1E-71657IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MDGKMNEKRF TESSISEDAI FSKCLNGIFE KSNELARLYN VIVVVMIVSF TGKPFLFKSP  60
SSLELVRILK LQKTLYSVMK DLVYEKERAK VLKKRHQEFL QKYEVKEIKN MKMDEAITFR  120
DNLKALQEII KRKKMDIEDL SSQKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00607.1_g00004.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018473767.11e-100PREDICTED: uncharacterized protein LOC108844990
TrEMBLV4KPE92e-30V4KPE9_EUTSA; Uncharacterized protein
STRINGXP_006398327.13e-31(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1548036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G47760.19e-23AGAMOUS-like 102