PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00612.1_g00012.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

C2H2

Protein Properties

Length: 210aa MW: 24240.6 Da PI: 5.6395

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00612.1_g00012.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.2	0.00057	183	199	1	17
EEETTTTEEESSHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLk 17 + C++C+k+F+r n++ Rsa1.0_00612.1_g00012.1 183 FACTICSKTFNRYNNMQ 199 78*********988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	3.3E-6	162	200	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 210 aa Download sequence Send to blast
MSLRNLHEMG LSFESPSFIE WLKAPSSSSS SLLFRIKTKD VVISGSNHQS MLERTMFLYQ 60 PQEPLNTSIR CLPLLNKLME NESQASDDIK EEKDDDDDVV TLQIGLPNYR RGSSVEDDSD 120 TTSDHHQKKP IKREIIDDGV VMMKKRRKTM EFDEEMNDLD MEVCGKRFWI PSPAQIHVGP 180 MQFACTICSK TFNRYNNMQV RLSLSYHLLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	143	147	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00612.1_g00012.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018438239.1	1e-145	PREDICTED: zinc finger protein WIP3
Swissprot	Q9SGD1	9e-97	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A397YV63	1e-123	A0A397YV63_BRACM; Uncharacterized protein
STRING	Bo5g008880.1	1e-115	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM239	28	237

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	7e-86	WIP domain protein 3

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]