PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00613.1_g00005.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family G2-like
Protein Properties Length: 207aa    MW: 23947.2 Da    PI: 8.873
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00613.1_g00005.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.26.6e-321568255
                  G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                             prlrW++eLH++Fv+aveqLGG+++AtPk +l+lm+v gLt++hvkSHLQ+YR+
  Rsa1.0_00613.1_g00005.1 15 PRLRWNCELHNSFVQAVEQLGGEHRATPKMVLQLMDVRGLTISHVKSHLQMYRS 68
                             8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.9161171IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-291169IPR009057Homeodomain-like
SuperFamilySSF466896.45E-141368IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-231569IPR006447Myb domain, plants
PfamPF002495.3E-61667IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MKTPIVRSYV RSKVPRLRWN CELHNSFVQA VEQLGGEHRA TPKMVLQLMD VRGLTISHVK  60
SHLQMYRSMK LEESMQDEIL AKRSVRVTGE VTWWQFQQYL HNYQRLRGSA NLFQNQPRQE  120
DEMYEKIITF GESSNGIKDA PSDYFTCKSL YESSRVRVSK RRADDDNGKI VCDTRDDGNV  180
VTVSLNSIKA SKCEEELSLE LTLGVKP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-171670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-171670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-171670357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-171670357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-171670458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00613.1_g00005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0740212e-37AF074021.1 Arabidopsis thaliana BAC F4H6, chromosome IV, complete sequence.
GenBankAL1615012e-37AL161501.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 13.
GenBankCP0026872e-37CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009144511.11e-140PREDICTED: protein PHOSPHATE STARVATION RESPONSE 1-like
TrEMBLA0A398ACY11e-138A0A398ACY1_BRACM; Uncharacterized protein
STRINGBo2g104640.11e-138(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04580.12e-36G2-like family protein