PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rsa1.0_00629.1_g00004.1

Organism

Raphanus sativus

Taxonomic ID

3726

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus

Family

bHLH

Protein Properties

Length: 337aa MW: 37405.9 Da PI: 6.7039

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rsa1.0_00629.1_g00004.1	genome	RGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	26.2	1.5e-08	252	292	9	54
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+RR+ri +++ L++l+P +K++ a++L +A +Y+k L Rsa1.0_00629.1_g00004.1 252 ARQRRERISEKIRVLQTLVPGG-----TKMDTASMLDEAANYLKFL 292 69****************87.....8**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.123	243	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.11E-13	248	307	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.9E-13	249	298	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.91E-11	249	297	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.2E-12	251	301	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	8.3E-6	252	292	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MEGLESVYAQ AIYGMNKTME HHQGSDLVWG GNELMPRELC SSSHQLINPN LRSCFMSDLG 60 VINEIQHQQH VGNRAASIDP SSLECLLSAT TNTSTEDDEG ISALFSDCQT LWSFGGGGVS 120 SAESENKEIT TETATTKPKS LKRNRDETGS HFRLVHHPQD ETEKGSFKLI YDENQPKKKP 180 RTEKGGGSSN ISFGHSASLS DNAEPDAEAI AQMKEMIYRA AAFRPVNFGL ETVEKPKRKN 240 VKISTDPQTV AARQRRERIS EKIRVLQTLV PGGTKMDTAS MLDEAANYLK FLRAQVKALE 300 NLRPKLDPTN LSFSSPLFHP SFLPMQNPNQ IHHHPEC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	175	181	PKKKPRT
2	252	257	RQRRER

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Rsa1.0_00629.1_g00004.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AF488617	1e-159	AF488617.1 Arabidopsis thaliana clone bHLH087 putative bHLH transcription factor mRNA, complete cds.
GenBank	AP001305	1e-159	AP001305.1 Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone:MHC9.
GenBank	BT020364	1e-159	BT020364.1 Arabidopsis thaliana At3g21330 gene, complete cds.
GenBank	CP002686	1e-159	CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018489296.1	0.0	PREDICTED: transcription factor bHLH87
Swissprot	Q8S3D2	0.0	BH087_ARATH; Transcription factor bHLH87
TrEMBL	A0A0D3CHK7	0.0	A0A0D3CHK7_BRAOL; Uncharacterized protein
STRING	Bo5g101160.1	0.0	(Brassica oleracea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7960	26	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21330.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]