PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00632.1_g00007.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family NAC
Protein Properties Length: 170aa    MW: 19373.8 Da    PI: 4.3976
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00632.1_g00007.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM82.49.2e-26686180
                      NAM  1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratks 80
                             l pGfrFhPtd elv +yLk+kv gkk+ + ++i+e+diyk+eP dLp k ++++++ +wyfF++r kky++g ++nr+t+s
  Rsa1.0_00632.1_g00007.1  6 LEPGFRFHPTDVELVRYYLKRKVLGKKFMT-NAIAELDIYKFEPPDLPeKsCLRTGDLKWYFFCPRLKKYPNGGKANRSTES 86
                             579************************988.89**************95357788889********************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-27486IPR003441NAC domain
PROSITE profilePS5100523.2876170IPR003441NAC domain
PfamPF023658.8E-13885IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MVKNSLEPGF RFHPTDVELV RYYLKRKVLG KKFMTNAIAE LDIYKFEPPD LPEKSCLRTG  60
DLKWYFFCPR LKKYPNGGKA NRSTESDDDD FYSMLDLFVV DSDESLRLDG FNNQYEVRHE  120
TGVPVVDEAP VSLEDVDMSW MQGDELFIGI EELIEPSTPP AAQAGHPGAS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-235841491Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that binds specific DNA sequences on the promoter regions of target genes. {ECO:0000250|UniProtKB:Q9C8W9}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00632.1_g00007.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7382771e-118KF738277.1 Brassica napus NAC transcription factor 103 (NAC103.1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018488474.17e-56PREDICTED: NAC domain-containing protein 82 isoform X1
RefseqXP_018488475.17e-56PREDICTED: NAC domain-containing protein 82 isoform X2
SwissprotQ9FY826e-39NAC82_ARATH; NAC domain-containing protein 82
TrEMBLA0A078D5T23e-52A0A078D5T2_BRANA; NAC transcription factor 103
TrEMBLA0A0D3BF793e-52A0A0D3BF79_BRAOL; Uncharacterized protein
TrEMBLA0A3P6BBT73e-52A0A3P6BBT7_BRAOL; Uncharacterized protein
STRINGBo3g101690.15e-53(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM79671340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64060.11e-48NAC domain containing protein 103
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Deeken R, et al.
    Identification of Arabidopsis thaliana phloem RNAs provides a search criterion for phloem-based transcripts hidden in complex datasets of microarray experiments.
    Plant J., 2008. 55(5): p. 746-59
    [PMID:18485061]
  3. Ohbayashi I, et al.
    Evidence for a Role of ANAC082 as a Ribosomal Stress Response Mediator Leading to Growth Defects and Developmental Alterations in Arabidopsis.
    Plant Cell, 2017. 29(10): p. 2644-2660
    [PMID:28899981]