PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00635.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family bHLH
Protein Properties Length: 132aa    MW: 14926.1 Da    PI: 8.0966
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00635.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.15.5e-074874430
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC CS
                      HLH  4 ahnerErrRRdriNsafeeLrellPka 30
                             +h  +Er RR++iN +   L++l+P +
  Rsa1.0_00635.1_g00016.1 48 SHILAERARREKINAWVKLLQKLVPGC 74
                             7999*********************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500036.787172IPR001849Pleckstrin homology domain
PROSITE profilePS508888.7914494IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-84777IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-44874IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.22E-64875IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF525403.81E-578128IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3004.3E-978128IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MDEKKGREDL NLAWADVYAK YHYKSLDHHS FSLKNSTRSA GCCEASDSHI LAERARREKI  60
NAWVKLLQKL VPGCEIRATL GRIMNVLGEP IDKRGEIKTD HYLPIHRDGP ALVDLATGQE  120
IRATGIKVDF EL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mab_B3e-147912890139PROTEIN (F1-ATPASE BETA CHAIN)
2f43_B3e-147912890139ATP synthase beta chain, mitochondrial
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00635.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2714685e-43AJ271468.1 Arabidopsis thaliana mRNA for mitochondrial F1 ATP synthase beta subunit (p_beta gene).
GenBankAK1185385e-43AK118538.1 Arabidopsis thaliana At5g08670 mRNA for putative H+-transporting ATP synthase beta chain (mitochondrial), complete cds, clone: RAFL19-76-L24.
GenBankAY0542225e-43AY054222.1 Arabidopsis thaliana At5g08670 mRNA, complete cds.
GenBankAY0806815e-43AY080681.1 Arabidopsis thaliana unknown protein (At5g08670) mRNA, complete cds.
GenBankAY1131785e-43AY113178.1 Arabidopsis thaliana At5g08670/At5g08670 mRNA, complete cds.
GenBankAY1172695e-43AY117269.1 Arabidopsis thaliana unknown protein (At5g08670) mRNA, complete cds.
GenBankBT0007965e-43BT000796.1 Arabidopsis thaliana unknown protein (At5g08670) mRNA, partial cds.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.11e-11bHLH family protein