PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00647.1_g00008.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 167aa    MW: 19170.3 Da    PI: 9.4796
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00647.1_g00008.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3322.2e-1050143580
                              -..-HHHHT.T-EE--HHH.HTT...............---..--SEEEEEETTS-EEEEEE....EEETTE..EEE-TTHHHHHH CS
                       B3   5 ltpsdvlks.grlvlpkkfaeeh...............ggkkeesktltledesgrsWevkliy..rkksgr..yvltkGWkeFvk 70 
                              lt+ dv k  + l++p + + +h               +g+ke++ t+ + d++ ++We+kl+   +k+  +  y+l+  W++ vk
  Rsa1.0_00647.1_g00008.1  50 LTTTDVDKGqSHLSIPMSSLLTHsfmtsdekekienrvKGDKEGGLTVEVIDPKLKVWELKLRSnmKKT--SslYLLAYQWNHVVK 133
                              5666666654559999999999999999999999999988999*******************8844444..446************ PP

                              HHT--TT-EE CS
                       B3  71 angLkegDfv 80 
                               n+ k+gD +
  Rsa1.0_00647.1_g00008.1 134 HNDFKQGDEL 143
                              *******965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF037547.7E-2336133IPR005508B3 domain-containing protein
Gene3DG3DSA:2.40.330.102.0E-1340159IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-1342158IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.9866162IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MANGDVGMEE LMPFKKRRSL RVVVELPVNV KEKIVEMGGT QETLITKRTL TTTDVDKGQS  60
HLSIPMSSLL THSFMTSDEK EKIENRVKGD KEGGLTVEVI DPKLKVWELK LRSNMKKTSS  120
LYLLAYQWNH VVKHNDFKQG DELQLWSFRS QQKLCLALVL LQGEERL
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00647.1_g00008.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018479981.11e-119PREDICTED: B3 domain-containing protein At3g25182-like
TrEMBLA0A3P6CK523e-99A0A3P6CK52_BRACM; Uncharacterized protein
STRINGXP_006411545.14e-55(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM200134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G05930.19e-12B3 family protein