PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00651.1_g00004.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family C2H2
Protein Properties Length: 162aa    MW: 17645.3 Da    PI: 10.5684
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00651.1_g00004.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.3e-0591113123
                              EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                              ++Cp+Cg  F+    L  H+r+H
  Rsa1.0_00651.1_g00004.1  91 HTCPICGLEFPMGQALGGHMRKH 113
                              79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.83E-737113No hitNo description
PfamPF139123.2E-113863IPR007087Zinc finger, C2H2
SMARTSM003550.963961IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.1823961IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
SMARTSM003550.03491113IPR015880Zinc finger, C2H2-like
PfamPF139124.5E-1191116IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.78391118IPR007087Zinc finger, C2H2
PROSITE patternPS00028093113IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MVARSVNLDQ TVADTEATCL MLLSRVGESR GERGETRVFR CKTCMKEFSS FQALGGHRAS  60
HKKPVNNSSD EQSSSLSSGS VTKKTKKRSS HTCPICGLEF PMGQALGGHM RKHRSEKESG  120
ALVTRSFLPE ATFTTLKKAS SGKRVACFGM VGKNNLLIYV LL
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00651.1_g00004.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018489229.11e-105PREDICTED: zinc finger protein ZAT8-like
SwissprotQ9LX852e-63ZAT8_ARATH; Zinc finger protein ZAT8
TrEMBLM4DSI45e-84M4DSI4_BRARP; Uncharacterized protein
STRINGBra019477.1-P8e-85(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20281876
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46080.14e-57C2H2 family protein