PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00658.1_g00003.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family GRAS
Protein Properties Length: 436aa    MW: 48869.9 Da    PI: 6.3936
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00658.1_g00003.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS501.53.4e-153524331374
                     GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                              l++lLl+cA++v+sg+l++a+a+L++l  l+spdgd+mqR+aayfteALa+r+++s+++lykal++++t+  n+see+++++lf++
  Rsa1.0_00658.1_g00003.1  52 LIHLLLTCANHVASGSLQNANAALEQLCLLSSPDGDTMQRVAAYFTEALANRILKSWPGLYKALNATQTN--NVSEEVHVRRLFFD 135
                              689***************************************************************9998..8************* PP

                     GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeel 172
                              ++Pilk+s+l++N+aIle++ege++vH+iD+ +s+++QW+aL+qa++sRpegpp+lRiTgv++    +ke l ++++ L + Ae+l
  Rsa1.0_00658.1_g00003.1 136 MFPILKVSYLLTNRAILESMEGEKMVHVIDLHASEPAQWLALIQAFNSRPEGPPHLRITGVHH----HKEVLDQMAHTLIEEAEKL 217
                              ***************************************************************....9****************** PP

                     GRAS 173 gvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll.............desvsles..erdevLklvkslsPkvvvvve 243
                              ++pf+fn+ v++ le+l++e+Lrvk+gEalaV++vlqlh++l             ++s++l++  ++d++L+++++lsPk++vv+e
  Rsa1.0_00658.1_g00003.1 218 DIPFQFNP-VVSGLECLNVEQLRVKTGEALAVSSVLQLHNFLatdnsghspsgdsASSLPLSNsgKIDRFLNAIWGLSPKIMVVTE 302
                              ********.79******************************************99666666666699******************* PP

                     GRAS 244 qeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvpl 329
                              q++dhn+++ +er+le+l++y+alfd+le+k+pr+s++r+kvE++l+g+ei+n++aceg errerhe+lekW++r++ aGF++vpl
  Rsa1.0_00658.1_g00003.1 303 QDSDHNGSTVMERLLESLYTYAALFDCLETKVPRTSQDRMKVEKMLFGEEIKNIIACEGCERRERHEKLEKWSQRIDLAGFGNVPL 388
                              ************************************************************************************** PP

                     GRAS 330 sekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                              s++ + q ++ll+ +++dgyr++eesg++v++W+drpL+svSaWr
  Rsa1.0_00658.1_g00003.1 389 SYYGMLQGRRLLQGYGFDGYRIKEESGCAVICWQDRPLYSVSAWR 433
                              ********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.03826413IPR005202Transcription factor GRAS
PfamPF035141.2E-15052433IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    Send to blast
MVTMFQEDNG TSSVASSPLQ VFSTMSLTRP TLIPSPSSPF KDLKPEERGL YLIHLLLTCA  60
NHVASGSLQN ANAALEQLCL LSSPDGDTMQ RVAAYFTEAL ANRILKSWPG LYKALNATQT  120
NNVSEEVHVR RLFFDMFPIL KVSYLLTNRA ILESMEGEKM VHVIDLHASE PAQWLALIQA  180
FNSRPEGPPH LRITGVHHHK EVLDQMAHTL IEEAEKLDIP FQFNPVVSGL ECLNVEQLRV  240
KTGEALAVSS VLQLHNFLAT DNSGHSPSGD SASSLPLSNS GKIDRFLNAI WGLSPKIMVV  300
TEQDSDHNGS TVMERLLESL YTYAALFDCL ETKVPRTSQD RMKVEKMLFG EEIKNIIACE  360
GCERRERHEK LEKWSQRIDL AGFGNVPLSY YGMLQGRRLL QGYGFDGYRI KEESGCAVIC  420
WQDRPLYSVS AWRCRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-64364352380Protein SCARECROW
5b3h_D1e-64364352380Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00658.1_g00003.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893010.0AC189301.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB030D08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018477484.10.0PREDICTED: scarecrow-like protein 3
RefseqXP_018477485.10.0PREDICTED: scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A397YC940.0A0A397YC94_BRACM; Uncharacterized protein
TrEMBLM4DCN50.0M4DCN5_BRARP; Uncharacterized protein
STRINGBra014251.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40982759
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.11e-168scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]