PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00666.1_g00002.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 318aa    MW: 35363.2 Da    PI: 4.6043
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00666.1_g00002.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2461.3e-14115162253
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkl 53 
                              +  GVr++k +g+W+AeIr+p     + +r +lg+f+t+e A++a+   rk++
  Rsa1.0_00666.1_g00002.1 115 KRVGVRQRK-WGKWAAEIRHPI----TkTRTWLGTFDTEEAAYQAYQDKRKEY 162
                              568*****9.**********72....36**********999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.19E-19114155No hitNo description
SMARTSM003801.5E-13115175IPR001471AP2/ERF domain
PROSITE profilePS5103217.28115172IPR001471AP2/ERF domain
PRINTSPR003673.2E-6116127IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-14116164IPR016177DNA-binding domain
PfamPF008471.0E-8117163IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.8E-18118157IPR001471AP2/ERF domain
PRINTSPR003673.2E-6138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MVEIRKQQSL VDTKKQKRSN SLLSLSTHPQ DTHQPLRKVR IIVNDPYATD DSSSDEEDAT  60
KNPRQVKRIV REVNFPPLEP RVEPPPSVSS SQDSTKTTSK KVVSVSVPAA LRLKKRVGVR  120
QRKWGKWAAE IRHPITKTRT WLGTFDTEEA AYQAYQDKRK EYDALVGITN DDSVSETSQC  180
SRSSPLEQDT SASVLTSVKP NEEEIKIATS NNVDSSSKEV LFDFNFADLP IPDFGFFEEP  240
MAAGVNEHDL DFDCFFTDDQ LVDDFGLLDD INGFGDNGPN ALPDFDFADL GLDLAGSGFL  300
GDQNGPPHIT CTMKSFAT
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00217DAPTransfer from AT1G68550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00666.1_g00002.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1893080.0AC189308.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB034A02, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445542.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
RefseqXP_018445543.10.0PREDICTED: ethylene-responsive transcription factor ERF118-like
SwissprotQ9CA271e-104EF118_ARATH; Ethylene-responsive transcription factor ERF118
TrEMBLA0A3N6RCH10.0A0A3N6RCH1_BRACR; Uncharacterized protein
STRINGBo6g096060.11e-177(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25372671
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68550.23e-78ERF family protein
Publications ? help Back to Top
  1. Tran MK,Schultz CJ,Baumann U
    Conserved upstream open reading frames in higher plants.
    BMC Genomics, 2008. 9: p. 361
    [PMID:18667093]