PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00671.1_g00014.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family Trihelix
Protein Properties Length: 285aa    MW: 31439.8 Da    PI: 10.0835
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00671.1_g00014.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.54.8e-2046137187
                 trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                              +W+ +e+ aLi+a+ ++ ++l+rg+lk+ +Weev++++  +  g+  +++++qC++k+e+l++ry+++ +++++   ++ +s++++
  Rsa1.0_00671.1_g00014.1  46 CWSLEETTALIDAYGDKRRDLGRGSLKADHWEEVAEAVaaACPGVtpRKTAVQCRHKMEKLRQRYRAEIQRARSVpVARFVSSWVH 131
                              7*************************************77444554478*************************977999****** PP

                 trihelix  82 fdqlea 87 
                              ++++ea
  Rsa1.0_00671.1_g00014.1 132 YKRMEA 137
                              ****85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.009943109IPR001005SANT/Myb domain
PfamPF138371.5E-1945137No hitNo description
PROSITE profilePS500906.14447107IPR017877Myb-like domain
SMARTSM005954.8E-954143IPR006578MADF domain
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSDPDSPSNH DPSSPPRQAL LPSTADPKTD PVPATSKSSR RLPPPCWSLE ETTALIDAYG  60
DKRRDLGRGS LKADHWEEVA EAVAAACPGV TPRKTAVQCR HKMEKLRQRY RAEIQRARSV  120
PVARFVSSWV HYKRMEATEN DDGGGGPTPR FFNRNGGGGG GIRIRIPTGV SVAGSGKYKA  180
SLSSGVSTNT RPGRVGADDE RGSEMMMPCN DEPIASAIKL LGDGMLRTEE KKMEMVREIE  240
AMRMEMEMKR TKMILESQQR IVETFAKTMS EMRKKKATRV SSSME
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00671.1_g00014.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018464254.10.0PREDICTED: trihelix transcription factor ASIL2-like
TrEMBLA0A3N6SPB41e-124A0A3N6SPB4_BRACR; Uncharacterized protein
STRINGXP_006397652.11e-119(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-64Trihelix family protein