PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rsa1.0_00678.1_g00016.1
Organism
Raphanus sativus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family B3
Protein Properties Length: 332aa    MW: 37899.6 Da    PI: 5.0259
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rsa1.0_00678.1_g00016.1genomeRGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.14.4e-2020107194
                              EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                              ffkv+   ++++s+ + +p ++ +e   + + +kt +l+ + g +W+v++  ++k+++++++kGW++Fv +n L +gDf++F ++g
  Rsa1.0_00678.1_g00016.1  20 FFKVF--ISHHSSDSMLIPISYNDEL--PRTLPKTAILQGTGGCVWKVEM--KRKRDEVYFGKGWNKFVTDNSLTDGDFLTFVYNG 99 
                              89999..666777779*****98665..567999****************..*********************************9 PP

                              SSEE..EE CS
                       B3  87 rsefelvv 94 
                              ++ fe  +
  Rsa1.0_00678.1_g00016.1 100 DNVFEVSI 107
                              99995544 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.1E-2313109IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.06E-2414113IPR015300DNA-binding pseudobarrel domain
CDDcd100178.74E-1918108No hitNo description
PROSITE profilePS5086314.22618111IPR003340B3 DNA binding domain
PfamPF023623.3E-1720106IPR003340B3 DNA binding domain
SMARTSM010197.9E-1820111IPR003340B3 DNA binding domain
SuperFamilySSF1019366.87E-5234316IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAGLIPYPLA MAADDTPPRF FKVFISHHSS DSMLIPISYN DELPRTLPKT AILQGTGGCV  60
WKVEMKRKRD EVYFGKGWNK FVTDNSLTDG DFLTFVYNGD NVFEVSIYAL GGCKEIRAVT  120
EVEDVKEDSV VSLSSEDTDT SSESDMANTI DKNKGKSQVV GVEDESEDEE DSDYKEDSTD  180
SDYEDSDSDY SEASNDLYAF NESSKSVALP KKKRERAVKK IKDPEKYLVD PNNVFFETSV  240
KNRPYELLVK GQLVKDYDLK FEKMVYYIDH HKDGKLQAKA TQWSDHRVCI MKWNHICKRN  300
KLKKGDGILC ELKRRQGVVY AVIIHIVREK DL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-18131134104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapRsa1.0_00678.1_g00016.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018480357.10.0PREDICTED: B3 domain-containing protein At4g34400-like isoform X1
TrEMBLA0A3P5ZTQ21e-172A0A3P5ZTQ2_BRACM; Uncharacterized protein
STRINGBra017651.1-P1e-173(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65551641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06220.18e-42B3 family protein